Rn01404476_m1 Best Coverage

• Gene Symbol: Snai2
• Gene Name: snail family zinc finger 2
• Gene Aliases: Slug
• Chromosome Location: Chr.11: 90404421 - 90406730 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Snai2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013035.1	NP_037167.1	2 - 3	622		64
GenBank mRNA	AF497973.1	-	2 - 3	622		64

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1100002040.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Snai2

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
osteoblast differentiation
epithelial to mesenchymal transition
epithelial to mesenchymal transition involved in endocardial cushion formation
cell migration involved in endocardial cushion formation
transcription from RNA polymerase II promoter
negative regulation of cell adhesion involved in substrate-bound cell migration
Notch signaling pathway
sensory perception of sound
response to radiation
negative regulation of keratinocyte proliferation
negative regulation of vitamin D biosynthetic process
neural crest cell development
cell migration
positive regulation of cell migration
negative regulation of chondrocyte differentiation
regulation of chemokine production
positive regulation of histone acetylation
negative regulation of catenin import into nucleus
desmosome disassembly
negative regulation of apoptotic process
pigmentation
negative regulation of DNA damage response, signal transduction by p53 class mediator
cellular response to fibroblast growth factor stimulus
positive regulation of fat cell differentiation
regulation of osteoblast differentiation
white fat cell differentiation
palate development
canonical Wnt signaling pathway
epithelium development
cartilage morphogenesis
regulation of branching involved in salivary gland morphogenesis
negative regulation of vitamin D receptor signaling pathway
cellular response to epidermal growth factor stimulus
cellular response to ionizing radiation
negative regulation of canonical Wnt signaling pathway
negative regulation of cell-cell adhesion by negative regulation of transcription from RNA polymerase II promoter
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
negative regulation of stem cell proliferation
regulation of bicellular tight junction assembly
negative regulation of anoikis
negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Function(s)

transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function
chromatin binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
sequence-specific DNA binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P161838	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P161838	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P161838	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P161838	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P503261	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10940585	-	-
Affymetrix Rat Gene 1.1 ST Array	10940585	-	-
Affymetrix Rat Clariom S Assay	PSR1100013631.rn.1	TC1100002040.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10940585	-	-
Rat Genome U34 Set	U97061_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21720818	-	-