Rn01405401_m1 Best Coverage

• Gene Symbol: Tbx1
• Gene Name: T-box 1
• Gene Aliases: -
• Chromosome Location: Chr.11: 86552022 - 86561647 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tbx1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108322.1	NP_001101792.1	2 - 3	165		67
	XM_006248619.2	XP_006248681.1	1 - 2	947		67

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1100000986.rn.1

Additional Information:

This assay is in the 5'UTR region of the NM_001108322.1 transcripts.

• Set Membership: Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
angiogenesis
blood vessel development
cell fate specification
neural crest cell migration
positive regulation of protein phosphorylation
lymph vessel development
blood vessel remodeling
positive regulation of mesenchymal cell proliferation
heart morphogenesis
outflow tract septum morphogenesis
outflow tract morphogenesis
transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
determination of left/right symmetry
pattern specification process
mesoderm development
heart development
muscle organ development
sensory perception of sound
biological_process
cell population proliferation
positive regulation of cell population proliferation
anterior/posterior pattern specification
vagus nerve morphogenesis
epithelial cell differentiation
thyroid gland development
social behavior
aorta morphogenesis
ear morphogenesis
inner ear morphogenesis
outer ear morphogenesis
middle ear morphogenesis
odontogenesis of dentin-containing tooth
muscle cell fate commitment
positive regulation of MAPK cascade
tongue morphogenesis
cellular response to fibroblast growth factor stimulus
negative regulation of cell differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
retinoic acid receptor signaling pathway
blood vessel morphogenesis
thymus development
muscle organ morphogenesis
embryonic cranial skeleton morphogenesis
embryonic viscerocranium morphogenesis
semicircular canal morphogenesis
artery morphogenesis
positive regulation of epithelial cell proliferation
parathyroid gland development
soft palate development
pharyngeal system development
face morphogenesis
muscle tissue morphogenesis
coronary artery morphogenesis
enamel mineralization
cellular response to retinoic acid
otic vesicle morphogenesis
positive regulation of secondary heart field cardioblast proliferation
cochlea morphogenesis
mesenchymal cell apoptotic process
regulation of animal organ morphogenesis
positive regulation of tongue muscle cell differentiation
negative regulation of mesenchymal cell apoptotic process

Function(s)

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function
DNA binding
DNA-binding transcription factor activity
protein homodimerization activity
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1100005611.rn.1	TC1100000986.rn.1	RTA TC