Rn01405407_g1

• Gene Symbol: Tbx1
• Gene Name: T-box 1
• Gene Aliases: -
• Chromosome Location: Chr.11: 86552022 - 86561647 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tbx1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108322.1	NP_001101792.1	8 - 9	1111		98
	XM_006248619.2	XP_006248681.1	7 - 8	1893		98

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1100000986.rn.1

• Set Membership: Amplicon length between 86 and 100, 3' Most, Detect Genomic DNA, Rattus norvegicus, 1700, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
angiogenesis
blood vessel development
cell fate specification
neural crest cell migration
positive regulation of protein phosphorylation
lymph vessel development
blood vessel remodeling
positive regulation of mesenchymal cell proliferation
heart morphogenesis
outflow tract septum morphogenesis
outflow tract morphogenesis
transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
determination of left/right symmetry
pattern specification process
mesoderm development
heart development
muscle organ development
sensory perception of sound
biological_process
cell population proliferation
positive regulation of cell population proliferation
anterior/posterior pattern specification
vagus nerve morphogenesis
epithelial cell differentiation
thyroid gland development
social behavior
aorta morphogenesis
ear morphogenesis
inner ear morphogenesis
outer ear morphogenesis
middle ear morphogenesis
odontogenesis of dentin-containing tooth
muscle cell fate commitment
positive regulation of MAPK cascade
tongue morphogenesis
cellular response to fibroblast growth factor stimulus
negative regulation of cell differentiation
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
retinoic acid receptor signaling pathway
blood vessel morphogenesis
thymus development
muscle organ morphogenesis
embryonic cranial skeleton morphogenesis
embryonic viscerocranium morphogenesis
semicircular canal morphogenesis
artery morphogenesis
positive regulation of epithelial cell proliferation
parathyroid gland development
soft palate development
pharyngeal system development
face morphogenesis
muscle tissue morphogenesis
coronary artery morphogenesis
enamel mineralization
cellular response to retinoic acid
otic vesicle morphogenesis
positive regulation of secondary heart field cardioblast proliferation
cochlea morphogenesis
mesenchymal cell apoptotic process
regulation of animal organ morphogenesis
positive regulation of tongue muscle cell differentiation
negative regulation of mesenchymal cell apoptotic process

Function(s)

RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding
DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function
DNA binding
DNA-binding transcription factor activity
protein homodimerization activity
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P009857	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	248325	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	281773	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	931076	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	322225	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	606029	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	640111	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	575699	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	5142	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009857	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009857	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P009857	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P419976	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10752298	-	-
Affymetrix Rat Gene 1.0 ST Array	10752300	-	-
Affymetrix Rat Gene 1.0 ST Array	10752299	-	-
Affymetrix Rat Gene 1.0 ST Array	10752302	-	-
Affymetrix Rat Gene 1.0 ST Array	10752296	-	-
Affymetrix Rat Gene 1.0 ST Array	10752301	-	-
Affymetrix Rat Gene 1.0 ST Array	10752297	-	-
Affymetrix Rat Gene 1.1 ST Array	10752295	-	-
Rat Genome 230 2.0 Array	1396786_at	-	-
Rat Genome 230 2.0 Array	1377490_PM_at	-	-
Rat Genome 230 2.0 Array	1378545_PM_at	-	-
Rat Genome 230 2.0 Array	1378545_at	-	-
Rat Genome 230 2.0 Array	1396786_PM_at	-	-
Rat Genome 230 2.0 Array	1377490_at	-	-
Affymetrix HT Rat Focus Array	1377490_PM_at	-	-
Affymetrix HT Rat Focus Array	1377490_at	-	-
Affymetrix Rat Clariom S Assay	PSR1100005619.rn.1	TC1100000986.rn.1	RTA TC
Rat Expression Set 230	1377490_PM_at	-	-
Rat Expression Set 230	1377490_at	-	-
Rat Expression Set 230	1378545_at	-	-
Rat Expression Set 230	1378545_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10752295	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21212109	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1357895	-	-