Rn01410832_g1 Best Coverage

• Gene Symbol: Pitx3
• Gene Name: paired-like homeodomain 3
• Gene Aliases: -
• Chromosome Location: Chr.1: 265886766 - 265899947 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pitx3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_019247.1	NP_062120.1	2 - 3	181		107
	XM_006231478.2	XP_006231540.1	2 - 3	360		107
GenBank mRNA	AJ011005.2	-	2 - 3	181		107

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100007809.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pitx3

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

lens development in camera-type eye
lens morphogenesis in camera-type eye
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
locomotory behavior
regulation of gene expression
midbrain development
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
neuron development
lens fiber cell differentiation
dopaminergic neuron differentiation

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P072653	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	683555	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	151941	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	464072	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	75339	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	883175	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	417995	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	18893	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	238262	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	613391	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	117784	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P072653	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P072653	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P072653	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P758492	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700535127	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	33317	-	-
Agilent Rat cDNA Microarray (G4105A)	700535127	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10730538	-	-
Affymetrix Rat Gene 1.0 ST Array	10730535	-	-
Affymetrix Rat Gene 1.0 ST Array	10730536	-	-
Affymetrix Rat Gene 1.0 ST Array	10730537	-	-
Affymetrix Rat Gene 1.1 ST Array	10730534	-	-
Rat Genome 230 2.0 Array	1370222_PM_at	-	-
Rat Genome 230 2.0 Array	1370222_at	-	-
Affymetrix HT Rat Focus Array	1370222_at	-	-
Affymetrix HT Rat Focus Array	1370222_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100063020.rn.1	TC0100007809.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063021.rn.1	TC0100007809.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063022.rn.1	TC0100007809.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100063019.rn.1	TC0100007809.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10730534	-	-
Rat Genome U34 Set	AJ011005_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22275333	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1365753	-	-
RatRef-12 Expression BeadChip	ILMN_66663	-	-