Rn01415600_m1 Best Coverage

• Gene Symbol: Foxa2
• Gene Name: forkhead box A2
• Gene Aliases: Hnf3b
• Chromosome Location: Chr.3: 142383093 - 142387493 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Foxa2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012743.1	NP_036875.1	2 - 3	259		65
	XM_006235139.2	XP_006235201.1	1 - 2	134		65
GenBank mRNA	L09647.1	-	2 - 3	259		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300001929.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Foxa2

Panther Classification:

Molecular Function -

winged helix/forkhead transcription factor

Gene Ontology Categories:

Process(es)

positive regulation of transcription from RNA polymerase II promoter by glucose
negative regulation of transcription from RNA polymerase II promoter by glucose
in utero embryonic development
ectoderm formation
cell fate specification
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
pattern specification process
adult locomotory behavior
anatomical structure morphogenesis
anterior/posterior pattern specification
dorsal/ventral pattern formation
regulation of gene expression
negative regulation of epithelial to mesenchymal transition
chromatin modification
regulation of lipid metabolic process
regulation of steroid metabolic process
cell differentiation in hindbrain
dorsal/ventral neural tube patterning
signal transduction involved in regulation of gene expression
regulation of blood coagulation
lung development
endocrine pancreas development
somite rostral/caudal axis specification
response to insulin
negative regulation of glucokinase activity
positive regulation of embryonic development
negative regulation of sequence-specific DNA binding transcription factor activity
negative regulation of neuron differentiation
positive regulation of neuron differentiation
positive regulation of smoothened signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of transcription from RNA polymerase III promoter
cell development
anatomical structure formation involved in morphogenesis
neuron fate specification
epithelial tube branching involved in lung morphogenesis
lung epithelial cell differentiation
regulation of insulin secretion involved in cellular response to glucose stimulus
connective tissue development
dopaminergic neuron differentiation
primitive streak formation
positive regulation of gastrulation
negative regulation of detection of glucose

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
protein binding
transcription factor binding
kinase binding
protein domain specific binding
sequence-specific DNA binding
transcription regulatory region DNA binding
SMAD binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P637279	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	806063	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	95142	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P637279	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P637279	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P637279	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P637279	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	47336	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10850522	-	-
Affymetrix Rat Gene 1.0 ST Array	10850523	-	-
Affymetrix Rat Gene 1.0 ST Array	10850524	-	-
Affymetrix Rat Gene 1.1 ST Array	10850521	-	-
Rat Genome 230 2.0 Array	1368711_PM_at	-	-
Rat Genome 230 2.0 Array	1368711_at	-	-
Affymetrix HT Rat Focus Array	1368711_at	-	-
Affymetrix HT Rat Focus Array	1368711_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300013906.rn.1	TC0300001929.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300013907.rn.1	TC0300001929.rn.1	RTA TC
Rat Expression Set 230	1368711_PM_at	-	-
Rat Expression Set 230	1368711_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10850521	-	-
Rat Genome U34 Set	L09647_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21782750	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1530196	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376893	-	-
RatRef-12 Expression BeadChip	ILMN_161603	-	-