Rn01415709_g1 Best Coverage

• Gene Symbol: Pax1
• Gene Name: paired box 1
• Gene Aliases: Pax-1
• Chromosome Location: Chr.3: 141577504 - 141589849 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pax1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107787.1	NP_001101257.1	3 - 4	1383		93
	XM_006235152.2	XP_006235214.2	4 - 5	2689		93

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300001922.rn.1

• Set Membership: Amplicon length between 86 and 100, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Gene Ontology Categories:

Process(es)

skeletal system development
somitogenesis
pattern specification process
cell population proliferation
CD4-positive, alpha-beta T cell differentiation
CD8-positive, alpha-beta T cell differentiation
positive regulation of transcription by RNA polymerase II
thymus development
parathyroid gland development
bone morphogenesis

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P839270	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P144815	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	563035	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	34165	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	45852	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	145274	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	683291	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	473150	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	251514	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	219194	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	353376	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	22617	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	22902	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P144815	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P839270	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P144815	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P839270	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P144815	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P839270	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P196894	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10840558	-	-
Affymetrix Rat Gene 1.0 ST Array	10840556	-	-
Affymetrix Rat Gene 1.0 ST Array	10840560	-	-
Affymetrix Rat Gene 1.0 ST Array	10840557	-	-
Affymetrix Rat Gene 1.0 ST Array	10840559	-	-
Affymetrix Rat Gene 1.1 ST Array	10840555	-	-
Rat Genome 230 2.0 Array	1391678_at	-	-
Rat Genome 230 2.0 Array	1391678_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300013873.rn.1	TC0300001922.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300013875.rn.1	TC0300001922.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300013874.rn.1	TC0300001922.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300013876.rn.1	TC0300001922.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300013870.rn.1	TC0300001922.rn.1	RTA TC
Rat Expression Set 230	1391678_PM_at	-	-
Rat Expression Set 230	1391678_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10840555	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21650099	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359768	-	-