Rn01416611_m1 Best Coverage

• Gene Symbol: Tal1
• Gene Name: T-cell acute lymphocytic leukemia 1
• Gene Aliases: Tal-1
• Chromosome Location: Chr.5: 133864403 - 133878604 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tal1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107958.2	NP_001101428.2	4 - 5	963		65
	XM_006238615.2	XP_006238677.1	4 - 5	829		65
	XM_006238617.1	XP_006238679.1	4 - 5	1037		65
	XM_006238618.2	XP_006238680.1	3 - 4	681		65
	XM_008763967.1	XP_008762189.1	4 - 5	1348		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500001235.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

basic helix-loop-helix transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
angiogenesis
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
locomotory behavior
biological_process
spinal cord association neuron differentiation
hemopoiesis
myeloid cell differentiation
neuron differentiation
erythrocyte differentiation
megakaryocyte differentiation
platelet formation
basophil differentiation
positive regulation of protein complex assembly
embryonic hemopoiesis
megakaryocyte development
regulation of cell proliferation
erythrocyte maturation
cell fate commitment
regulation of myeloid cell differentiation
positive regulation of erythrocyte differentiation
positive regulation of chromatin assembly or disassembly
positive regulation of transcription, DNA-templated
positive regulation of mitotic cell cycle
positive regulation of transcription from RNA polymerase II promoter
generation of neurons
positive regulation of cell division
astrocyte fate commitment
definitive hemopoiesis
hemangioblast cell differentiation
hematopoietic stem cell differentiation
regulation of mast cell differentiation
regulation of stem cell population maintenance

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
RNA polymerase II transcription factor binding
molecular_function
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
enzyme binding
histone deacetylase binding
transcription regulatory region DNA binding
protein heterodimerization activity
E-box binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P024282	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P714723	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	348267	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	630565	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	224467	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	345905	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	970266	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	786916	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	182356	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	567186	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	430304	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	83330	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	151861	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	649373	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	69627	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	120351	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P024282	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P714723	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P024282	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P714723	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P714723	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P024282	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P431564	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P702668	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	86606	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10871074	-	-
Affymetrix Rat Gene 1.0 ST Array	10871072	-	-
Affymetrix Rat Gene 1.0 ST Array	10871075	-	-
Affymetrix Rat Gene 1.0 ST Array	10871073	-	-
Affymetrix Rat Gene 1.1 ST Array	10871071	-	-
Rat Genome 230 2.0 Array	1394720_PM_at	-	-
Rat Genome 230 2.0 Array	1394720_at	-	-
Rat Genome 230 2.0 Array	1389342_at	-	-
Rat Genome 230 2.0 Array	1389342_PM_at	-	-
Affymetrix HT Rat Focus Array	1394720_PM_at	-	-
Affymetrix HT Rat Focus Array	1389342_at	-	-
Affymetrix HT Rat Focus Array	1389342_PM_at	-	-
Affymetrix HT Rat Focus Array	1394720_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500008417.rn.1	TC0500001235.rn.1	RTA TC
Rat Expression Set 230	1389342_at	-	-
Rat Expression Set 230	1389342_PM_at	-	-
Rat Expression Set 230	1394720_at	-	-
Rat Expression Set 230	1394720_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10871071	-	-
Rat Genome U34 Set	rc_AI112988_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22197535	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_2040620	-	-