Rn01417457_g1

Gene Symbol:

Ybx1 Ybx1-ps3

Gene Name:

Y box binding protein 1

Y box protein 1 related, pseudogene 3

Gene Aliases:

Byb1, Cbfa, Dbpb, Ef1a, Msy1, Nsep1, Yb1

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Chromosome Location:

Chr.5: 138319753 - 138336721 on Build Rnor_6.0

Chromosome Location:

Chr.10: 40380357 - 40381897 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

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Assay Details

Gene Symbol: Ybx1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031563.3	NP_113751.3	5 - 6	776		76
	XM_008764058.1	XP_008762280.1	5 - 6	816		76
	XM_008764059.1	XP_008762281.1	4 - 5	926		76
GenBank mRNA	AB046928.2	-	5 - 6	935		76
	BC072486.1	-	5 - 6	776		76
	BC098672.1	-	5 - 6	776		76
	BC103637.1	-	5 - 6	770		76
	D13309.1	-	5 - 6	746		76
	FQ232156.1	-	2 - 3	418		76
	M57299.1	-	5 - 6	752		76

Gene Symbol: Ybx1-ps3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038098.1		1	787		76

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500003495.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ybx1
Click here to find siRNAs for Gene Ybx1-ps3

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
in utero embryonic development
transcription, DNA-templated
regulation of transcription, DNA-templated
mRNA processing
positive regulation of cell population proliferation
RNA splicing
negative regulation of apoptotic process
positive regulation of transcription by RNA polymerase II
negative regulation of insulin receptor signaling pathway
negative regulation of striated muscle cell differentiation
positive regulation of cell division
CRD-mediated mRNA stabilization
biological_process

Function(s)

RNA polymerase II cis-regulatory region sequence-specific DNA binding
p53 binding
DNA binding
chromatin binding
single-stranded DNA binding
RNA binding
mRNA binding
transcription factor binding
sequence-specific DNA binding
molecular_function

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P009809	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P009810	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	262282	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	546445	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	21573	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	125095	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	911170	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	397223	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	775932	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	653996	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	385391	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	252992	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	7267	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	785133	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	222149	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	875837	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	334044	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	972704	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	99260	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	24111	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	52119	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	44243	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	78776	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	67941	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009809	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009810	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009809	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009810	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P009809	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P009810	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P109617	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	33657	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	55266	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10725157	-	-
Affymetrix Rat Gene 1.0 ST Array	10725158	-	-
Affymetrix Rat Gene 1.0 ST Array	10879379	-	-
Affymetrix Rat Gene 1.0 ST Array	10879374	-	-
Affymetrix Rat Gene 1.0 ST Array	10879375	-	-
Affymetrix Rat Gene 1.0 ST Array	10742742	-	-
Affymetrix Rat Gene 1.0 ST Array	10742743	-	-
Affymetrix Rat Gene 1.0 ST Array	10879376	-	-
Affymetrix Rat Gene 1.0 ST Array	10879373	-	-
Affymetrix Rat Gene 1.0 ST Array	10879377	-	-
Affymetrix Rat Gene 1.0 ST Array	10742741	-	-
Affymetrix Rat Gene 1.0 ST Array	10725156	-	-
Affymetrix Rat Gene 1.0 ST Array	10879378	-	-
Affymetrix Rat Gene 1.1 ST Array	10725155	-	-
Affymetrix Rat Gene 1.1 ST Array	10742740	-	-
Affymetrix Rat Gene 1.1 ST Array	10879372	-	-
Rat Genome 230 2.0 Array	1370213_at	-	-
Rat Genome 230 2.0 Array	1370213_at	-	-
Rat Genome 230 2.0 Array	1370213_PM_at	-	-
Rat Genome 230 2.0 Array	1370213_PM_at	-	-
Affymetrix HT Rat Focus Array	1370213_PM_at	-	-
Affymetrix HT Rat Focus Array	1370213_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500025872.rn.1	TC0500003495.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500025865.rn.1	TC0500003495.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500025871.rn.1	TC0500003495.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500025864.rn.1	TC0500003495.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500025867.rn.1	TC0500003495.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500025868.rn.1	TC0500003495.rn.1	RTA TC
Rat Expression Set 230	1370213_at	-	-
Rat Expression Set 230	1370213_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10879372	-	-
Affymetrix Rat Gene 1.0 ST Array	10725155	-	-
Affymetrix Rat Gene 1.0 ST Array	10742740	-	-
Rat Genome U34 Set	S83025_s_at	-	-
Rat Genome U34 Set	rc_AI230572_at	-	-
Rat Genome U34 Set	rc_AI072435_at	-	-
Rat Genome U34 Set	D13309_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21579955	-	-
ABI Rat Genome Survey Microarray	22413090	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1365375	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376984	-	-