Rn01417459_g1

Gene Symbol:

Ybx1 Ybx1-ps3

Gene Name:

Y box binding protein 1

Y box protein 1 related, pseudogene 3

Gene Aliases:

Byb1, Cbfa, Dbpb, Ef1a, Msy1, Nsep1, Yb1

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Chromosome Location:

Chr.5: 138319753 - 138336721 on Build Rnor_6.0

Chromosome Location:

Chr.10: 40380357 - 40381897 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

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Assay Details

Gene Symbol: Ybx1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031563.3	NP_113751.3	1 - 2	280		113
	XM_008764058.1	XP_008762280.1	1 - 2	320		113
	XM_008764059.1	XP_008762281.1	1 - 2	520		113
GenBank mRNA	AB046928.2	-	1 - 2	439		113
	BC072486.1	-	1 - 2	280		113
	BC098672.1	-	1 - 2	280		113
	BC103637.1	-	1 - 2	274		113
	D13309.1	-	1 - 2	250		113
	M57299.1	-	1 - 2	256		113
	M69138.1	-	1 - 2	416		113

Gene Symbol: Ybx1-ps3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038098.1		1	291		113

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500003495.rn.1, TC1000002818.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ybx1
Click here to find siRNAs for Gene Ybx1-ps3

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
in utero embryonic development
transcription, DNA-templated
regulation of transcription, DNA-templated
mRNA processing
positive regulation of cell population proliferation
RNA splicing
negative regulation of apoptotic process
positive regulation of transcription by RNA polymerase II
negative regulation of insulin receptor signaling pathway
negative regulation of striated muscle cell differentiation
positive regulation of cell division
CRD-mediated mRNA stabilization
biological_process

Function(s)

RNA polymerase II cis-regulatory region sequence-specific DNA binding
p53 binding
DNA binding
chromatin binding
single-stranded DNA binding
RNA binding
mRNA binding
transcription factor binding
sequence-specific DNA binding
molecular_function

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0500025877.rn.1	TC0500003495.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000024746.rn.1	TC1000002818.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500025878.rn.1	TC0500003495.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500025879.rn.1	TC0500003495.rn.1	RTA TC