Rn01420926_m1 Best Coverage

• Gene Symbol: Tcf7l1
• Gene Name: transcription factor 7-like 1 (T-cell specific, HMG-box)
• Gene Aliases: Tcf3
• Chromosome Location: Chr.4: 100492796 - 100660406 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tcf7l1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107865.1	NP_001101335.1	11 - 12	1339		70
	XM_006236673.2	XP_006236735.1	12 - 13	1648		70
	XM_006236674.2	XP_006236736.1	12 - 13	1645		70
	XM_006236675.2	XP_006236737.1	11 - 12	1606		70

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400003087.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

biological_process
anterior/posterior axis specification, embryo
somatic stem cell population maintenance
skin development
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter during mitosis
axial mesoderm morphogenesis
stem cell differentiation
canonical Wnt signaling pathway
regulation of stem cell population maintenance

Function(s)

molecular_function
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
beta-catenin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P013318	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P013324	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	24656	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	907445	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	47830	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	419244	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	956725	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	909080	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	948205	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	380236	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	64557	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	200306	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	957259	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	55956	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	823935	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	151709	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	489262	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	167454	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	153490	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	76836	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013324	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013318	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013324	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013318	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P013318	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P013324	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	65576	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10863280	-	-
Affymetrix Rat Gene 1.0 ST Array	10863278	-	-
Affymetrix Rat Gene 1.0 ST Array	10863260	-	-
Affymetrix Rat Gene 1.0 ST Array	10863261	-	-
Affymetrix Rat Gene 1.0 ST Array	10863279	-	-
Affymetrix Rat Gene 1.0 ST Array	10863281	-	-
Affymetrix Rat Gene 1.0 ST Array	10863276	-	-
Affymetrix Rat Gene 1.0 ST Array	10863259	-	-
Affymetrix Rat Gene 1.1 ST Array	10863277	-	-
Affymetrix Rat Gene 1.1 ST Array	10863275	-	-
Affymetrix Rat Gene 1.1 ST Array	10863258	-	-
Rat Genome 230 2.0 Array	1382558_PM_at	-	-
Rat Genome 230 2.0 Array	1382558_at	-	-
Rat Genome 230 2.0 Array	1390283_PM_at	-	-
Rat Genome 230 2.0 Array	1390283_at	-	-
Affymetrix HT Rat Focus Array	1390283_at	-	-
Affymetrix HT Rat Focus Array	1382558_at	-	-
Affymetrix HT Rat Focus Array	1390283_PM_at	-	-
Affymetrix HT Rat Focus Array	1382558_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0400021938.rn.1	TC0400003087.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400021939.rn.1	TC0400003087.rn.1	RTA TC
Rat Expression Set 230	1390283_PM_at	-	-
Rat Expression Set 230	1390283_at	-	-
Rat Expression Set 230	1382558_at	-	-
Rat Expression Set 230	1382558_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10863277	-	-
Affymetrix Rat Gene 1.0 ST Array	10863275	-	-
Affymetrix Rat Gene 1.0 ST Array	10863258	-	-
Rat Genome U34 Set	rc_AI045720_at	-	-
Rat Genome U34 Set	rc_AA998085_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21889208	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363479	-	-