Rn01425140_m1 Best Coverage

• Gene Symbol: Snca
• Gene Name: synuclein, alpha (non A4 component of amyloid precursor)
• Gene Aliases: -
• Chromosome Location: Chr.4: 90782412 - 90882539 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Snca
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_019169.2	NP_062042.1	2 - 3	283		81
	XM_006236591.2	XP_006236653.1	2 - 3	564		81
GenBank mRNA	AF007758.1	-	1 - 2	146		81
	AY550005.1	-	1 - 2	146		81
	AY550006.1	-	1 - 2	146		81
	BC087682.1	-	2 - 3	283	7321273	81
	FQ212580.1	-	2 - 3	260		81
	S73007.1	-	2 - 3	214		81
	S73008.1	-	2 - 3	214		81

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400002994.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Snca

Panther Classification:

Molecular Function -

membrane trafficking regulatory protein

Gene Ontology Categories:

Process(es)

microglial cell activation
positive regulation of receptor recycling
negative regulation of protein phosphorylation
positive regulation of neurotransmitter secretion
synaptic transmission, dopaminergic
fatty acid metabolic process
neutral lipid metabolic process
phospholipid metabolic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
mitochondrial membrane organization
chemical synaptic transmission
aging
adult locomotory behavior
response to iron(II) ion
regulation of phospholipase activity
negative regulation of platelet-derived growth factor receptor signaling pathway
regulation of glutamate secretion
regulation of dopamine secretion
negative regulation of microtubule polymerization
receptor internalization
protein destabilization
response to magnesium ion
negative regulation of transporter activity
response to lipopolysaccharide
negative regulation of monooxygenase activity
positive regulation of peptidyl-serine phosphorylation
response to interferon-gamma
cellular response to oxidative stress
negative regulation of histone acetylation
regulation of locomotion
response to cocaine
dopamine biosynthetic process
dopamine metabolic process
response to drug
mitochondrial ATP synthesis coupled electron transport
regulation of macrophage activation
negative regulation of apoptotic process
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
regulation of neuron apoptotic process
negative regulation of neuron apoptotic process
cellular response to fibroblast growth factor stimulus
positive regulation of endocytosis
negative regulation of exocytosis
negative regulation of dopamine metabolic process
regulation of neurotransmitter secretion
behavioral response to cocaine
regulation of neuronal synaptic plasticity
regulation of long-term neuronal synaptic plasticity
synaptic vesicle endocytosis
synaptic vesicle transport
positive regulation of synaptic transmission
synapse organization
regulation of acyl-CoA biosynthetic process
positive regulation of release of sequestered calcium ion into cytosol
negative regulation of dopamine uptake involved in synaptic transmission
negative regulation of serotonin uptake
negative regulation of norepinephrine uptake
calcium ion homeostasis
oxidation-reduction process
excitatory postsynaptic potential
long-term synaptic potentiation
positive regulation of inositol phosphate biosynthetic process
membrane organization
negative regulation of thrombin receptor signaling pathway
response to interleukin-1
cellular response to copper ion
positive regulation of protein serine/threonine kinase activity
regulation of neuron death
positive regulation of glutathione peroxidase activity
positive regulation of hydrogen peroxide catabolic process

Function(s)

magnesium ion binding
fatty acid binding
copper ion binding
calcium ion binding
protein binding
phospholipid binding
microtubule binding
ferrous iron binding
zinc ion binding
oxidoreductase activity
kinesin binding
enzyme binding
protein domain specific binding
Hsp70 protein binding
histone binding
identical protein binding
alpha-tubulin binding
cysteine-type endopeptidase inhibitor activity involved in apoptotic process
phospholipase binding
dynein binding
protein N-terminus binding
tau protein binding
beta-tubulin binding
arachidonic acid binding
phosphoprotein binding
phospholipase D inhibitor activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0400021309.rn.1	TC0400002994.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400021311.rn.1	TC0400002994.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400021310.rn.1	TC0400002994.rn.1	RTA TC