Snca
Genomic Map
Back To TopAssay Details
| Gene Symbol: Snca | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_019169.2 | NP_062042.1 | 5 - 6 | 555 | 72 | |
| GenBank mRNA | AF007758.1 | - | 4 - 5 | 418 | 72 | |
| AY550005.1 | - | 4 - 5 | 418 | 72 | ||
| AY550006.1 | - | 4 - 5 | 418 | 72 | ||
| BC087682.1 | - | 5 - 6 | 555 | 7321273 | 72 | |
| FQ212580.1 | - | 5 - 6 | 532 | 72 | ||
| S73007.1 | - | 5 - 6 | 486 | 72 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0400002994.rn.1Set Membership: |
Ambion siRNA available
Amplicon length between 71 and 85
3' Most
Mammalian Gene Collection
Rattus norvegicus
1700
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
microglial cell activation
positive regulation of receptor recycling
negative regulation of protein phosphorylation
positive regulation of neurotransmitter secretion
synaptic transmission, dopaminergic
fatty acid metabolic process
neutral lipid metabolic process
phospholipid metabolic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
mitochondrial membrane organization
chemical synaptic transmission
aging
adult locomotory behavior
response to iron(II) ion
regulation of phospholipase activity
negative regulation of platelet-derived growth factor receptor signaling pathway
regulation of glutamate secretion
regulation of dopamine secretion
negative regulation of microtubule polymerization
receptor internalization
protein destabilization
response to magnesium ion
negative regulation of transporter activity
response to lipopolysaccharide
negative regulation of monooxygenase activity
positive regulation of peptidyl-serine phosphorylation
response to interferon-gamma
cellular response to oxidative stress
negative regulation of histone acetylation
regulation of locomotion
response to cocaine
dopamine biosynthetic process
dopamine metabolic process
response to drug
mitochondrial ATP synthesis coupled electron transport
regulation of macrophage activation
negative regulation of apoptotic process
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
regulation of neuron apoptotic process
negative regulation of neuron apoptotic process
cellular response to fibroblast growth factor stimulus
positive regulation of endocytosis
negative regulation of exocytosis
negative regulation of dopamine metabolic process
regulation of neurotransmitter secretion
behavioral response to cocaine
regulation of neuronal synaptic plasticity
regulation of long-term neuronal synaptic plasticity
synaptic vesicle endocytosis
synaptic vesicle transport
positive regulation of synaptic transmission
synapse organization
regulation of acyl-CoA biosynthetic process
positive regulation of release of sequestered calcium ion into cytosol
negative regulation of dopamine uptake involved in synaptic transmission
negative regulation of serotonin uptake
negative regulation of norepinephrine uptake
calcium ion homeostasis
oxidation-reduction process
excitatory postsynaptic potential
long-term synaptic potentiation
positive regulation of inositol phosphate biosynthetic process
membrane organization
negative regulation of thrombin receptor signaling pathway
response to interleukin-1
cellular response to copper ion
positive regulation of protein serine/threonine kinase activity
regulation of neuron death
positive regulation of glutathione peroxidase activity
positive regulation of hydrogen peroxide catabolic process
magnesium ion binding
fatty acid binding
copper ion binding
calcium ion binding
protein binding
phospholipid binding
microtubule binding
ferrous iron binding
zinc ion binding
oxidoreductase activity
kinesin binding
enzyme binding
protein domain specific binding
Hsp70 protein binding
histone binding
identical protein binding
alpha-tubulin binding
cysteine-type endopeptidase inhibitor activity involved in apoptotic process
phospholipase binding
dynein binding
protein N-terminus binding
tau protein binding
beta-tubulin binding
arachidonic acid binding
phosphoprotein binding
phospholipase D inhibitor activity
microglial cell activation
positive regulation of receptor recycling
negative regulation of protein phosphorylation
positive regulation of neurotransmitter secretion
synaptic transmission, dopaminergic
fatty acid metabolic process
neutral lipid metabolic process
phospholipid metabolic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
mitochondrial membrane organization
chemical synaptic transmission
aging
adult locomotory behavior
response to iron(II) ion
regulation of phospholipase activity
negative regulation of platelet-derived growth factor receptor signaling pathway
regulation of glutamate secretion
regulation of dopamine secretion
negative regulation of microtubule polymerization
receptor internalization
protein destabilization
response to magnesium ion
negative regulation of transporter activity
response to lipopolysaccharide
negative regulation of monooxygenase activity
positive regulation of peptidyl-serine phosphorylation
response to interferon-gamma
cellular response to oxidative stress
negative regulation of histone acetylation
regulation of locomotion
response to cocaine
dopamine biosynthetic process
dopamine metabolic process
response to drug
mitochondrial ATP synthesis coupled electron transport
regulation of macrophage activation
negative regulation of apoptotic process
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
regulation of neuron apoptotic process
negative regulation of neuron apoptotic process
cellular response to fibroblast growth factor stimulus
positive regulation of endocytosis
negative regulation of exocytosis
negative regulation of dopamine metabolic process
regulation of neurotransmitter secretion
behavioral response to cocaine
regulation of neuronal synaptic plasticity
regulation of long-term neuronal synaptic plasticity
synaptic vesicle endocytosis
synaptic vesicle transport
positive regulation of synaptic transmission
synapse organization
regulation of acyl-CoA biosynthetic process
positive regulation of release of sequestered calcium ion into cytosol
negative regulation of dopamine uptake involved in synaptic transmission
negative regulation of serotonin uptake
negative regulation of norepinephrine uptake
calcium ion homeostasis
oxidation-reduction process
excitatory postsynaptic potential
long-term synaptic potentiation
positive regulation of inositol phosphate biosynthetic process
membrane organization
negative regulation of thrombin receptor signaling pathway
response to interleukin-1
cellular response to copper ion
positive regulation of protein serine/threonine kinase activity
regulation of neuron death
positive regulation of glutathione peroxidase activity
positive regulation of hydrogen peroxide catabolic process
magnesium ion binding
fatty acid binding
copper ion binding
calcium ion binding
protein binding
phospholipid binding
microtubule binding
ferrous iron binding
zinc ion binding
oxidoreductase activity
kinesin binding
enzyme binding
protein domain specific binding
Hsp70 protein binding
histone binding
identical protein binding
alpha-tubulin binding
cysteine-type endopeptidase inhibitor activity involved in apoptotic process
phospholipase binding
dynein binding
protein N-terminus binding
tau protein binding
beta-tubulin binding
arachidonic acid binding
phosphoprotein binding
phospholipase D inhibitor activity
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P160635 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P158616 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 863241 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 598903 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 694605 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 349560 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 187193 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 655048 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 369596 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 919714 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 796007 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 51159 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 679799 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 375555 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 331162 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 680194 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 688225 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 534362 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 250150 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 896211 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 562411 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 927354 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 349155 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 490100 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 132298 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 456894 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 129776 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 542138 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 865629 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 104080 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 718835 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 330207 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 845052 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 919291 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 640528 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 866604 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 321426 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 317940 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 407746 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 717634 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 769409 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 631051 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 264312 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 488221 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 960210 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 624583 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 511274 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 139877 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 166196 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 245456 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 598281 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 646048 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 630686 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 261102 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 779073 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 162812 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 205910 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 58367 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 209837 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 370830 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 116205 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 212412 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 814963 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 133292 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 354958 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 434797 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 655603 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 477834 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 407199 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 130780 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 565494 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 884643 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 224878 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 724556 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 139034 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 103460 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 154288 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 20018 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 168361 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 110162 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 61594 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 146356 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 37656 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 27601 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 180500 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 114870 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P158616 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P160635 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P158616 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P160635 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P160635 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P158616 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P348154 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P348157 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 702025516 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 76780 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 78610 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 78824 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 2340 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 6597 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 92099 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 72314 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 62787 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 75093 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 702025516 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10862821 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862824 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862828 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862826 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862827 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862829 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862822 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862823 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10862820 | - | - |
| Rat Genome 230 2.0 Array | 1367977_at | - | - |
| Rat Genome 230 2.0 Array | 1367977_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1367977_at | - | - |
| Affymetrix HT Rat Focus Array | 1367977_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0400021302.rn.1 | TC0400002994.rn.1 | RTA TC |
| Rat Expression Set 230 | 1367977_at | - | - |
| Rat Expression Set 230 | 1367977_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10862820 | - | - |
| Rat Genome U34 Set | S73007_at | - | - |
| Rat Genome U34 Set | S73008_at | - | - |
| Rat Genome U34 Set | S73007_g_at | - | - |
| Rat Genome U34 Set | AF007758_g_at | - | - |
| Rat Genome U34 Set | S73009_at | - | - |
| Rat Genome U34 Set | AF007758_at | - | - |
| Rat Genome U34 Set | AF007758_at | - | - |
| Rat Genome U34 Set | AF007758_g_at | - | - |
| Rat Genome U34 Set | S73007_g_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21007285 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1363385 | - | - |
| RatRef-12 Expression BeadChip | ILMN_67644 | - | - |
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