Rn01427493_m1 Best Coverage

• Gene Symbol: D2hgdh
• Gene Name: D-2-hydroxyglutarate dehydrogenase
• Gene Aliases: RGD1307976
• Chromosome Location: Chr.9: 100956569 - 100974393 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: D2hgdh
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001106926.1	NP_001100396.1	9 - 10	1701		68
	XM_006245520.2	XP_006245582.1	9 - 10	1617		68
	XM_006245521.2	XP_006245583.1	9 - 10	1475		68
	XM_006245522.2	XP_006245584.1	9 - 10	1470		68
	XM_008767365.1	XP_008765587.1	9 - 10	1732		68
GenBank mRNA	BC166559.1	-	8 - 9	1374	7312233	68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900001190.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Panther Classification:

Molecular Function -

dehydrogenase, oxidoreductase, metabolite interconversion enzyme

Gene Ontology Categories:

Process(es)

response to manganese ion
response to zinc ion
response to cobalt ion
response to magnesium ion
cellular protein metabolic process
response to calcium ion
oxidation-reduction process

Function(s)

UDP-N-acetylmuramate dehydrogenase activity
flavin adenine dinucleotide binding
(R)-2-hydroxyglutarate dehydrogenase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P504274	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	476623	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	666149	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	56818	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	51995	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	347980	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	632741	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	735563	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	191757	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	772671	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	789410	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	741331	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	180576	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	198157	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	138945	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	723695	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	15981	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	106489	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P504274	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P504274	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P504274	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P504274	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	56136	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10925675	-	-
Affymetrix Rat Gene 1.0 ST Array	10925674	-	-
Affymetrix Rat Gene 1.0 ST Array	10925677	-	-
Affymetrix Rat Gene 1.0 ST Array	10925671	-	-
Affymetrix Rat Gene 1.0 ST Array	10925676	-	-
Affymetrix Rat Gene 1.0 ST Array	10925672	-	-
Affymetrix Rat Gene 1.0 ST Array	10925673	-	-
Affymetrix Rat Gene 1.0 ST Array	10925670	-	-
Affymetrix Rat Gene 1.1 ST Array	10925669	-	-
Rat Genome 230 2.0 Array	1382047_at	-	-
Rat Genome 230 2.0 Array	1382047_PM_at	-	-
Affymetrix HT Rat Focus Array	1382047_at	-	-
Affymetrix HT Rat Focus Array	1382047_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900010395.rn.1	TC0900001190.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0900010394.rn.1	TC0900001190.rn.1	RTA TC
Rat Expression Set 230	1382047_at	-	-
Rat Expression Set 230	1382047_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10925669	-	-
Rat Genome U34 Set	rc_AA899888_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21610528	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1356262	-	-