Rn01427980_m1 Best Coverage

• Gene Symbol: RT1-Da
• Gene Name: RT1 class II, locus Da
• Gene Aliases: DA1, H2-Ea, RT1-u
• Chromosome Location: Chr.20: 4127644 - 4132616 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: RT1-Da
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001008847.2	NP_001008847.1	1 - 2	136		101
GenBank mRNA	BC098677.1	-	1 - 2	102	7373701	101
	FM048166.1	-	1 - 2	136		101
	FQ218574.1	-	1 - 2	127		101
	FQ220763.1	-	1 - 2	124		101
	FQ220966.1	-	1 - 2	129		101
	FQ226848.1	-	1 - 2	127		101
	FQ227693.1	-	1 - 2	127		101
	FQ227948.1	-	1 - 2	127		101
	FQ230207.1	-	1 - 2	127		101
	FQ232717.1	-	1 - 2	124		101
	FQ233042.1	-	1 - 2	127		101
	FQ233454.1	-	1 - 2	119		101
	FQ233943.1	-	1 - 2	127		101
	FQ234684.1	-	1 - 2	129		101
	FQ235025.1	-	1 - 2	119		101
	KC222932.1	-	1 - 2	81		101
	KC222933.1	-	1 - 2	81		101
	KC222934.1	-	1 - 2	81		101
	KC222935.1	-	1 - 2	81		101
	KC222936.1	-	1 - 2	81		101

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001067.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene RT1-Da

Panther Classification:

Molecular Function -

major histocompatibility complex protein

Gene Ontology Categories:

Process(es)

peptide antigen assembly with MHC class II protein complex
antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
polysaccharide assembly with MHC class II protein complex
immune response
biological_process
cognition

Function(s)

molecular_function
MHC class II protein complex binding
peptide antigen binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR2000008716.rn.1	TC2000001067.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000008715.rn.1	TC2000001067.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000008717.rn.1	TC2000001067.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000008718.rn.1	TC2000001067.rn.1	RTA TC