Rn01428307_m1

Gene Symbol:

Smarcb1 LOC103694876

Gene Name:

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1

Gene Aliases:

-

-

Chromosome Location:

Chr.20: 13679956 - 13702821 on Build Rnor_6.0

Chromosome Location:

Chr.Un|NW_007906819: 32993 - 55858 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: Smarcb1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001025728.1	NP_001020899.1	7 - 8	1159		92
	XM_006256318.2	XP_006256380.1	7 - 8	1945		92
	XM_006256319.2	XP_006256381.1	6 - 7	1237		92
GenBank mRNA	BC099195.1	-	7 - 8	1159	7383650	92
	FQ232860.1	-	7 - 8	1151		92

Gene Symbol: LOC103694876
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_008773843.1	XP_008772065.1	7 - 8	1945		92
	XM_008773844.1	XP_008772066.1	7 - 8	1918		92
	XM_008773845.1	XP_008772067.1	6 - 7	1237		92

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect transcript(s) from off target gene(s). Please contact Tech Support if you need more information.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smarcb1
Click here to find siRNAs for Gene LOC103694876

Panther Classification:

Molecular Function -

DNA metabolism protein

Gene Ontology Categories:

Process(es)

blastocyst development
blastocyst hatching
nucleosome disassembly
chromatin remodeling
biological_process
negative regulation of cell proliferation
cell differentiation
single stranded viral RNA replication via double stranded DNA intermediate
ATP-dependent chromatin remodeling
positive regulation by host of viral transcription
positive regulation of transcription from RNA polymerase II promoter
positive regulation of sequence-specific DNA binding transcription factor activity

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
p53 binding
transcription coactivator activity
protein binding
Tat protein binding
nucleosomal DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P215595	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	122617	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	609726	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	167734	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	246453	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	481557	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	829209	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	485005	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	62201	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	909974	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	201474	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	257096	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	478160	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	889345	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	259000	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	182716	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	74176	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	511877	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	227399	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	134801	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	59753	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P215595	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P215595	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P215595	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P215595	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	37739	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	27523	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	79678	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10829640	-	-
Affymetrix Rat Gene 1.0 ST Array	10829641	-	-
Affymetrix Rat Gene 1.0 ST Array	10829644	-	-
Affymetrix Rat Gene 1.0 ST Array	10829647	-	-
Affymetrix Rat Gene 1.0 ST Array	10829643	-	-
Affymetrix Rat Gene 1.0 ST Array	10829646	-	-
Affymetrix Rat Gene 1.0 ST Array	10829648	-	-
Affymetrix Rat Gene 1.0 ST Array	10829645	-	-
Affymetrix Rat Gene 1.0 ST Array	10829642	-	-
Affymetrix Rat Gene 1.1 ST Array	10829639	-	-
Rat Genome 230 2.0 Array	1371914_PM_at	-	-
Rat Genome 230 2.0 Array	1371914_at	-	-
Affymetrix HT Rat Focus Array	1371914_PM_at	-	-
Affymetrix HT Rat Focus Array	1371914_at	-	-
Rat Expression Set 230	1371914_PM_at	-	-
Rat Expression Set 230	1371914_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10829639	-	-
Rat Genome U34 Set	rc_H33459_at	-	-
Rat Genome U34 Set	rc_AA875151_f_at	-	-
Rat Genome U34 Set	rc_H33459_g_at	-	-
Rat Genome U34 Set	rc_H33459_g_at	-	-
Rat Genome U34 Set	rc_H33459_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21318586	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1369924	-	-