Rn01429090_g1 Best Coverage

• Gene Symbol: RT1-Bb
• Gene Name: RT1 class II, locus Bb
• Gene Aliases: Bb, RT1.B
• Chromosome Location: Chr.20: 4043726 - 4049367 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: RT1-Bb
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001004084.2	NP_001004084.1	5 - 6	846		95
GenBank mRNA	BC079121.1	-	5 - 6	831		95
	X56596.1	-	5 - 6	785		95

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001799.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene RT1-Bb

Gene Ontology Categories:

Process(es)

B cell affinity maturation
immunoglobulin production involved in immunoglobulin-mediated immune response
humoral immune response mediated by circulating immunoglobulin
antigen processing and presentation of peptide or polysaccharide antigen via MHC class II
positive regulation of antigen processing and presentation
positive regulation of T-helper 1 type immune response
immune response
antigen processing and presentation
antigen processing and presentation of exogenous peptide antigen via MHC class II
negative regulation of T cell proliferation
positive regulation of alpha-beta T cell activation
antigen processing and presentation of peptide antigen
cellular response to morphine
cellular response to interferon-gamma
cellular response to glucocorticoid stimulus
cellular response to dexamethasone stimulus

Function(s)

transcription factor binding
toxic substance binding
ubiquitin protein ligase binding
peptide antigen binding
protein heterodimerization activity
DNA-binding transcription factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P043911	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P552452	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	132662	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	897590	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	565624	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	852513	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	68192	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P043911	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P552452	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P552452	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P043911	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P043911	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P552452	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P552452	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P500803	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700531563	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700372078	-	-
Agilent Rat cDNA Microarray (G4105A)	700372078	-	-
Agilent Rat cDNA Microarray (G4105A)	700531563	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10831572	-	-
Affymetrix Rat Gene 1.0 ST Array	10831571	-	-
Affymetrix Rat Gene 1.0 ST Array	10831568	-	-
Affymetrix Rat Gene 1.0 ST Array	10831569	-	-
Affymetrix Rat Gene 1.0 ST Array	10831573	-	-
Affymetrix Rat Gene 1.0 ST Array	10831570	-	-
Affymetrix Rat Gene 1.1 ST Array	10831567	-	-
Rat Genome 230 2.0 Array	1371033_PM_at	-	-
Rat Genome 230 2.0 Array	1371065_PM_at	-	-
Rat Genome 230 2.0 Array	1371065_at	-	-
Rat Genome 230 2.0 Array	1371033_at	-	-
Affymetrix HT Rat Focus Array	1371033_at	-	-
Affymetrix HT Rat Focus Array	1371033_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000014500.rn.1	TC2000001799.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000014499.rn.1	TC2000001799.rn.1	RTA TC
Rat Expression Set 230	1371033_at	-	-
Rat Expression Set 230	1371065_PM_at	-	-
Rat Expression Set 230	1371065_at	-	-
Rat Expression Set 230	1371033_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10831567	-	-
Rat Genome U34 Set	X56596_at	-	-
Rat Genome U34 Set	U65217_i_at	-	-
Rat Genome U34 Set	M36151cds_s_at	-	-
Rat Genome U34 Set	M15358cds_at	-	-
Rat Genome U34 Set	M36151cds_i_at	-	-
Rat Genome U34 Set	rc_AI228153_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22278888	-	-