Rn01429393_g1 Best Coverage

• Gene Symbol: Hmga1
• Gene Name: high mobility group AT-hook 1
• Gene Aliases: Hmgi, Hmgiy
• Chromosome Location: Chr.20: 7132490 - 7140155 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hmga1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_139327.1	NP_647543.1	2 - 3	219		66
	XM_006256156.1	XP_006256218.1	3 - 4	366		66
	XM_006256157.2	XP_006256219.1	4 - 5	479		66
	XM_006256158.2	XP_006256220.1	3 - 4	408		66
	XM_006256161.1	XP_006256223.1	3 - 4	333		66
	XM_006256162.2	XP_006256224.1	3 - 4	369		66
	XM_006256163.2	XP_006256225.1	3 - 4	744		66
GenBank mRNA	AF507966.1	-	2 - 3	219		66
	AF511040.1	-	2 - 3	206		66

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hmga1

Panther Classification:

Molecular Function -

endodeoxyribonuclease

Gene Ontology Categories:

Process(es)

DNA catabolic process, endonucleolytic
base-excision repair
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
spermatogenesis
negative regulation of cell proliferation
response to virus
senescence-associated heterochromatin focus assembly
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
oncogene-induced cell senescence
positive regulation of cellular senescence

Function(s)

transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
DNA-(apurinic or apyrimidinic site) lyase activity
transcription factor binding
enzyme binding
ligand-dependent nuclear receptor transcription coactivator activity
retinoic acid receptor binding
peroxisome proliferator activated receptor binding
retinoid X receptor binding
5'-deoxyribose-5-phosphate lyase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR2000002679.rn.1	TC2000000292.rn.1	RTA TC