Rn01433707_g1

• Gene Symbol: Lims1
• Gene Name: LIM and senescent cell antigen-like domains 1
• Gene Aliases: Pinch1, RGD1560732
• Chromosome Location: Chr.20: 27895983 - 28004767 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Lims1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001145456.1	NP_001138928.1	8 - 9	959		78
	XM_006256385.2	XP_006256447.1	8 - 9	2861		78
	XM_006256386.2	XP_006256448.1	8 - 9	2861		78
	XM_006256387.2	XP_006256449.1	8 - 9	2858		78
	XM_006256388.2	XP_006256450.1	8 - 9	2725		78
	XM_006256389.2	XP_006256451.1	8 - 9	952		78
	XM_006256390.2	XP_006256452.1	8 - 9	2532		78
	XM_006256391.2	XP_006256453.1	8 - 9	2531		78
GenBank mRNA	FJ640984.1	-	8 - 9	959		78
	FJ640985.1	-	8 - 9	1038		78
	FQ222665.1	-	8 - 9	1047		78

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000629.rn.1

• Set Membership: Amplicon length between 71 and 85, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Gene Ontology Categories:

Process(es)

epithelial to mesenchymal transition
cell-matrix adhesion
establishment or maintenance of cell polarity
positive regulation of gene expression
positive regulation of cell-substrate adhesion
chordate embryonic development
negative regulation of apoptotic process
positive regulation of GTPase activity
establishment of protein localization
cell-cell junction organization
negative regulation of transcription, DNA-templated
regulation of epithelial cell proliferation
negative regulation of epithelial cell proliferation
protein heterooligomerization
positive regulation of focal adhesion assembly
cellular response to transforming growth factor beta stimulus
cell-cell adhesion
positive regulation of substrate adhesion-dependent cell spreading
negative regulation of neural precursor cell proliferation
negative regulation of hepatocyte proliferation
positive regulation of integrin-mediated signaling pathway

Function(s)

zinc ion binding
protein kinase binding
protein domain specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR2000005538.rn.1	TC2000000629.rn.1	RTA TC