Rn01433711_m1

• Gene Symbol: Lims1
• Gene Name: LIM and senescent cell antigen-like domains 1
• Gene Aliases: Pinch1, RGD1560732
• Chromosome Location: Chr.20: 27895983 - 28004767 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Lims1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001145456.1	NP_001138928.1	9 - 10	1037		83
	XM_006256387.2	XP_006256449.1	9 - 10	2936		83
	XM_006256391.2	XP_006256453.1	9 - 10	2609		83
GenBank mRNA	FJ640984.1	-	9 - 10	1037		83
	FJ640985.1	-	9 - 10	1116		83
	FQ222665.1	-	9 - 10	1125		83

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000629.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Rattus norvegicus, 1700, Probe spans exons

Panther Classification:

Molecular Function -

cell junction protein

Gene Ontology Categories:

Process(es)

epithelial to mesenchymal transition
cell-matrix adhesion
establishment or maintenance of cell polarity
positive regulation of gene expression
positive regulation of cell-substrate adhesion
single organismal cell-cell adhesion
chordate embryonic development
negative regulation of apoptotic process
positive regulation of GTPase activity
establishment of protein localization
cell-cell junction organization
negative regulation of transcription, DNA-templated
regulation of epithelial cell proliferation
negative regulation of epithelial cell proliferation
protein heterooligomerization
positive regulation of focal adhesion assembly
cellular response to transforming growth factor beta stimulus
positive regulation of substrate adhesion-dependent cell spreading
negative regulation of neural precursor cell proliferation
negative regulation of hepatocyte proliferation
positive regulation of integrin-mediated signaling pathway

Function(s)

zinc ion binding
protein kinase binding
protein domain specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P457246	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	720230	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	308654	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	251357	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	927044	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	180515	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	461480	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	283962	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	641787	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	216830	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	376680	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	575155	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	941042	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	695308	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	873145	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	566363	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	673623	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	818943	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	820147	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	802401	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	731727	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	533755	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	450406	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	693418	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	335678	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	399783	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	496145	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	890712	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	271025	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	341206	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	48688	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	105425	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	912838	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	387873	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	347398	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	722165	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	727058	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	567428	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	77671	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	110464	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	175749	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	73448	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	172385	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	146346	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	114186	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P457246	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P457246	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P457246	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P457246	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10833526	-	-
Affymetrix Rat Gene 1.0 ST Array	10833534	-	-
Affymetrix Rat Gene 1.0 ST Array	10833528	-	-
Affymetrix Rat Gene 1.0 ST Array	10833524	-	-
Affymetrix Rat Gene 1.0 ST Array	10833531	-	-
Affymetrix Rat Gene 1.0 ST Array	10833533	-	-
Affymetrix Rat Gene 1.0 ST Array	10833532	-	-
Affymetrix Rat Gene 1.0 ST Array	10833530	-	-
Affymetrix Rat Gene 1.0 ST Array	10833529	-	-
Affymetrix Rat Gene 1.0 ST Array	10833527	-	-
Affymetrix Rat Gene 1.1 ST Array	10833523	-	-
Rat Genome 230 2.0 Array	1385430_at	-	-
Rat Genome 230 2.0 Array	1385430_PM_at	-	-
Affymetrix HT Rat Focus Array	1385430_PM_at	-	-
Affymetrix HT Rat Focus Array	1385430_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000005541.rn.1	TC2000000629.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000005542.rn.1	TC2000000629.rn.1	RTA TC
Rat Expression Set 230	1385430_at	-	-
Rat Expression Set 230	1385430_PM_at	-	-
Rat Genome U34 Set	rc_AA799637_at	-	-
Rat Genome U34 Set	rc_AA799637_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22153839	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1650346	-	-