Rn01433711_m1

• Gene Symbol: Lims1
• Gene Name: LIM and senescent cell antigen-like domains 1
• Gene Aliases: Pinch1, RGD1560732
• Chromosome Location: Chr.20: 27895983 - 28004767 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Lims1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001145456.1	NP_001138928.1	9 - 10	1037		83
	XM_006256387.2	XP_006256449.1	9 - 10	2936		83
	XM_006256391.2	XP_006256453.1	9 - 10	2609		83
GenBank mRNA	FJ640984.1	-	9 - 10	1037		83
	FJ640985.1	-	9 - 10	1116		83
	FQ222665.1	-	9 - 10	1125		83

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000629.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Rattus norvegicus, 1700, Probe spans exons

Gene Ontology Categories:

Process(es)

epithelial to mesenchymal transition
cell-matrix adhesion
establishment or maintenance of cell polarity
positive regulation of gene expression
positive regulation of cell-substrate adhesion
chordate embryonic development
negative regulation of apoptotic process
positive regulation of GTPase activity
establishment of protein localization
cell-cell junction organization
negative regulation of transcription, DNA-templated
regulation of epithelial cell proliferation
negative regulation of epithelial cell proliferation
protein heterooligomerization
positive regulation of focal adhesion assembly
cellular response to transforming growth factor beta stimulus
cell-cell adhesion
positive regulation of substrate adhesion-dependent cell spreading
negative regulation of neural precursor cell proliferation
negative regulation of hepatocyte proliferation
positive regulation of integrin-mediated signaling pathway

Function(s)

zinc ion binding
protein kinase binding
protein domain specific binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P457246	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	731727	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	450406	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	496145	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	376680	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	216830	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	308654	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	873145	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	251357	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	180515	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	673623	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	575155	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	271025	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	722165	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	335678	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	399783	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	941042	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	387873	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	727058	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	461480	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	533755	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	566363	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	802401	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	693418	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	927044	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	641787	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	720230	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	567428	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	695308	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	347398	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	912838	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	820147	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	105425	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	283962	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	341206	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	818943	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	890712	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	48688	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	146346	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	175749	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	172385	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	73448	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	77671	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	114186	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	110464	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P457246	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P457246	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P457246	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P457246	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10833526	-	-
Affymetrix Rat Gene 1.0 ST Array	10833534	-	-
Affymetrix Rat Gene 1.0 ST Array	10833524	-	-
Affymetrix Rat Gene 1.0 ST Array	10833529	-	-
Affymetrix Rat Gene 1.0 ST Array	10833533	-	-
Affymetrix Rat Gene 1.0 ST Array	10833531	-	-
Affymetrix Rat Gene 1.0 ST Array	10833530	-	-
Affymetrix Rat Gene 1.0 ST Array	10833527	-	-
Affymetrix Rat Gene 1.0 ST Array	10833532	-	-
Affymetrix Rat Gene 1.0 ST Array	10833528	-	-
Affymetrix Rat Gene 1.1 ST Array	10833523	-	-
Rat Genome 230 2.0 Array	1385430_PM_at	-	-
Rat Genome 230 2.0 Array	1385430_at	-	-
Affymetrix HT Rat Focus Array	1385430_at	-	-
Affymetrix HT Rat Focus Array	1385430_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000005542.rn.1	TC2000000629.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000005541.rn.1	TC2000000629.rn.1	RTA TC
Rat Expression Set 230	1385430_at	-	-
Rat Expression Set 230	1385430_PM_at	-	-
Rat Genome U34 Set	rc_AA799637_at	-	-
Rat Genome U34 Set	rc_AA799637_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22153839	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1650346	-	-