Rn01433957_m1

• Gene Symbol: Gja1
• Gene Name: gap junction protein, alpha 1
• Gene Aliases: Cx43
• Chromosome Location: Chr.20: 37876589 - 37889097 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Gja1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012567.2	NP_036699.1	1 - 2	188		87
GenBank mRNA	AY324140.1	-	1 - 2	188		87
	AY555737.1	-	1 - 2	221		87
	BC081842.1	-	1 - 2	184	7105924	87

More Information

Additional Information:

This assay is in the 5'UTR region of the AY324140.1, AY555737.1, BC081842.1, NM_012567.2 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Gja1

Panther Classification:

Molecular Function -

gap junction

Gene Ontology Categories:

Process(es)

osteoblast differentiation
in utero embryonic development
neuron migration
negative regulation of endothelial cell proliferation
heart looping
epithelial cell maturation
lens development in camera-type eye
chronic inflammatory response
positive regulation of glomerular filtration
endothelium development
atrial ventricular junction remodeling
apoptotic process
cell communication
signal transduction
positive regulation of cytosolic calcium ion concentration
cell-cell signaling
heart development
adult heart development
regulation of heart contraction
negative regulation of cell proliferation
response to pH
response to glucose
vascular transport
positive regulation of gene expression
negative regulation of gene expression
cell communication by chemical coupling
cell communication by electrical coupling
positive regulation of cell communication by chemical coupling
ATP transport
gap junction assembly
regulation of bone mineralization
positive regulation of insulin secretion
ion transmembrane transport
response to fluid shear stress
embryonic heart tube development
embryonic digit morphogenesis
positive regulation of I-kappaB kinase/NF-kappaB signaling
skeletal muscle tissue regeneration
response to peptide hormone
cell-cell junction organization
positive regulation of osteoblast differentiation
positive regulation of protein catabolic process
positive regulation of striated muscle tissue development
positive regulation of vasoconstriction
positive regulation of vasodilation
regulation of bone remodeling
blood vessel morphogenesis
neuron projection morphogenesis
protein oligomerization
regulation of calcium ion transport
transmembrane transport
negative regulation of cardiac muscle cell proliferation
milk ejection
regulation of ventricular cardiac muscle cell membrane repolarization
regulation of atrial cardiac muscle cell membrane depolarization
regulation of ventricular cardiac muscle cell membrane depolarization
negative regulation of wound healing
cardiac conduction
cellular response to mechanical stimulus
negative regulation of DNA biosynthetic process
regulation of bicellular tight junction assembly
positive regulation of behavioral fear response

Function(s)

signal transducer activity
receptor binding
gap junction channel activity
protein binding
ion transmembrane transporter activity
SH3 domain binding
protein domain specific binding
PDZ domain binding
beta-tubulin binding
connexin binding
scaffold protein binding
gap junction channel activity involved in cell communication by electrical coupling

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P393551	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	550303	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	839570	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	880600	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	371072	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	701967	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	193550	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	498032	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	35111	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	596692	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	563224	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	14867	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P393551	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P393551	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P393551	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P278604	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P393551	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	67759	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	79812	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10830191	-	-
Affymetrix Rat Gene 1.0 ST Array	10830190	-	-
Affymetrix Rat Gene 1.1 ST Array	10830189	-	-
Rat Genome 230 2.0 Array	1369639_PM_at	-	-
Rat Genome 230 2.0 Array	1372002_at	-	-
Rat Genome 230 2.0 Array	1369640_PM_at	-	-
Rat Genome 230 2.0 Array	1372002_PM_at	-	-
Rat Genome 230 2.0 Array	1369639_at	-	-
Rat Genome 230 2.0 Array	1369640_at	-	-
Affymetrix HT Rat Focus Array	1372002_at	-	-
Affymetrix HT Rat Focus Array	1372002_PM_at	-	-
Affymetrix HT Rat Focus Array	1369640_at	-	-
Affymetrix HT Rat Focus Array	1369639_PM_at	-	-
Affymetrix HT Rat Focus Array	1369639_at	-	-
Affymetrix HT Rat Focus Array	1369640_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000006343.rn.1	TC2000000750.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000006345.rn.1	TC2000000750.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000006338.rn.1	TC2000000750.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000006342.rn.1	TC2000000750.rn.1	RTA TC
Rat Expression Set 230	1369640_PM_at	-	-
Rat Expression Set 230	1369639_at	-	-
Rat Expression Set 230	1369639_PM_at	-	-
Rat Expression Set 230	1369640_at	-	-
Rat Expression Set 230	1372002_PM_at	-	-
Rat Expression Set 230	1372002_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10830189	-	-
Rat Genome U34 Set	rc_AI029183_s_at	-	-
Rat Genome U34 Set	rc_AI043613_at	-	-
Rat Genome U34 Set	rc_AA858448_at	-	-
Rat Genome U34 Set	rc_AI029183_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21672527	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1355543	-	-
RatRef-12 Expression BeadChip	ILMN_51511	-	-