Rn01435145_m1 Best Coverage

• Gene Symbol: Irf4
• Gene Name: interferon regulatory factor 4
• Gene Aliases: -
• Chromosome Location: Chr.17: 34886746 - 34905192 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Irf4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001106108.1	NP_001099578.1	8 - 9	1276		100
	XM_006253899.2	XP_006253961.1	8 - 9	1348		100
	XM_006253900.2	XP_006253962.1	7 - 8	1243		100

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700001695.rn.1

• Set Membership: Amplicon length between 86 and 100, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
protein methylation
biological_process
peptidyl-lysine methylation
negative regulation of toll-like receptor signaling pathway
defense response to protozoan
myeloid dendritic cell differentiation
positive regulation of DNA binding
histone H3 acetylation
histone H4 acetylation
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
T-helper 17 cell lineage commitment

Function(s)

transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
molecular_function
DNA-binding transcription factor activity
protein-lysine N-methyltransferase activity
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P342426	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	406981	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	834760	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	502336	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	722934	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	134799	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	556267	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	516123	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	20310	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	947418	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	28796	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	588233	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	906086	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	301771	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	113993	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	19925	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P342426	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P342426	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P342426	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P342426	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10798176	-	-
Affymetrix Rat Gene 1.0 ST Array	10798182	-	-
Affymetrix Rat Gene 1.0 ST Array	10798178	-	-
Affymetrix Rat Gene 1.0 ST Array	10798183	-	-
Affymetrix Rat Gene 1.0 ST Array	10798181	-	-
Affymetrix Rat Gene 1.0 ST Array	10798180	-	-
Affymetrix Rat Gene 1.0 ST Array	10798179	-	-
Affymetrix Rat Gene 1.0 ST Array	10798177	-	-
Affymetrix Rat Gene 1.1 ST Array	10798175	-	-
Affymetrix Rat Clariom S Assay	PSR1700011660.rn.1	TC1700001695.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700011659.rn.1	TC1700001695.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10798175	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22346257	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1354706	-	-