Rn01439203_m1 Best Coverage

• Gene Symbol: Phyhd1
• Gene Name: phytanoyl-CoA dioxygenase domain containing 1
• Gene Aliases: -
• Chromosome Location: Chr.3: 8829593 - 8846126 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Phyhd1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001013081.1	NP_001013099.1	9 - 10	742		87
	XM_006233777.2	XP_006233839.1	10 - 11	1126		87
	XM_006233778.2	XP_006233840.1	10 - 11	1126		87
	XM_006233779.2	XP_006233841.1	10 - 11	1819		87
	XM_006233780.2	XP_006233842.1	10 - 11	882		87
GenBank mRNA	BC091389.1	-	9 - 10	742	7321523	87
	FQ212963.1	-	9 - 10	758		87
	FQ219572.1	-	6 - 7	745		87
	FQ223356.1	-	9 - 10	749		87

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300000207.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Phyhd1

Panther Classification:

Molecular Function -

oxygenase

Gene Ontology Categories:

Process(es)

oxidation-reduction process

Function(s)

metal ion binding
dioxygenase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P441339	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	820393	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	812150	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	953935	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	146517	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	887907	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	960176	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	642767	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	576471	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	77303	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	51318	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	490636	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	49959	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	97225	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P441339	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P441339	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P441339	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P441339	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	32215	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	45078	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10835163	-	-
Affymetrix Rat Gene 1.0 ST Array	10835162	-	-
Affymetrix Rat Gene 1.0 ST Array	10835168	-	-
Affymetrix Rat Gene 1.0 ST Array	10835159	-	-
Affymetrix Rat Gene 1.0 ST Array	10835164	-	-
Affymetrix Rat Gene 1.0 ST Array	10835161	-	-
Affymetrix Rat Gene 1.0 ST Array	10835167	-	-
Affymetrix Rat Gene 1.0 ST Array	10835165	-	-
Affymetrix Rat Gene 1.0 ST Array	10835160	-	-
Affymetrix Rat Gene 1.0 ST Array	10835166	-	-
Affymetrix Rat Gene 1.1 ST Array	10835158	-	-
Rat Genome 230 2.0 Array	1371974_at	-	-
Rat Genome 230 2.0 Array	1371974_PM_at	-	-
Affymetrix HT Rat Focus Array	1371974_at	-	-
Affymetrix HT Rat Focus Array	1371974_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300002327.rn.1	TC0300000207.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300002326.rn.1	TC0300000207.rn.1	RTA TC
Rat Expression Set 230	1371974_PM_at	-	-
Rat Expression Set 230	1371974_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10835158	-	-
Rat Genome U34 Set	rc_AI070315_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21903125	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1367049	-	-