Rn01439519_m1 Best Coverage

• Gene Symbol: Vcp
• Gene Name: valosin-containing protein
• Gene Aliases: -
• Chromosome Location: Chr.5: 58426548 - 58445953 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Vcp
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053864.2	NP_446316.1	15 - 16	2372		65
GenBank mRNA	BC060518.1	-	15 - 16	2372	5597843	65
	U11760.1	-	15 - 16	2404		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500002599.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Vcp

Gene Ontology Categories:

Process(es)

double-strand break repair
ubiquitin-dependent protein catabolic process
ER to Golgi vesicle-mediated transport
activation of cysteine-type endopeptidase activity involved in apoptotic process
cellular response to DNA damage stimulus
protein ubiquitination
protein N-linked glycosylation via asparagine
translesion synthesis
ER-associated ubiquitin-dependent protein catabolic process
retrograde protein transport, ER to cytosol
positive regulation of protein complex assembly
positive regulation of proteasomal ubiquitin-dependent protein catabolic process
protein hexamerization
positive regulation of protein catabolic process
protein homooligomerization
aggresome assembly
positive regulation of protein K63-linked deubiquitination
positive regulation of Lys63-specific deubiquitinase activity

Function(s)

receptor binding
protein binding
ATP binding
lipid binding
ATPase activity
protein phosphatase binding
protein domain specific binding
polyubiquitin binding
protein complex binding
deubiquitinase activator activity
identical protein binding
ADP binding
poly(A) RNA binding
ubiquitin-specific protease binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P156433	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	665759	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	82371	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	969970	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	361408	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	664087	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	893935	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	338693	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	514851	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	757170	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	488714	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	845452	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	151916	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	408890	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	350272	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	137743	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	147263	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	57500	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P156433	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P156433	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P156433	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P156433	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700145748	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	77719	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	30776	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	5402	-	-
Agilent Rat cDNA Microarray (G4105A)	700145748	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10876233	-	-
Affymetrix Rat Gene 1.0 ST Array	10876231	-	-
Affymetrix Rat Gene 1.0 ST Array	10876232	-	-
Affymetrix Rat Gene 1.0 ST Array	10876226	-	-
Affymetrix Rat Gene 1.0 ST Array	10876238	-	-
Affymetrix Rat Gene 1.0 ST Array	10876229	-	-
Affymetrix Rat Gene 1.0 ST Array	10876241	-	-
Affymetrix Rat Gene 1.0 ST Array	10876234	-	-
Affymetrix Rat Gene 1.0 ST Array	10876235	-	-
Affymetrix Rat Gene 1.0 ST Array	10876239	-	-
Affymetrix Rat Gene 1.0 ST Array	10876237	-	-
Affymetrix Rat Gene 1.0 ST Array	10876236	-	-
Affymetrix Rat Gene 1.0 ST Array	10876225	-	-
Affymetrix Rat Gene 1.0 ST Array	10876230	-	-
Affymetrix Rat Gene 1.0 ST Array	10876228	-	-
Affymetrix Rat Gene 1.0 ST Array	10876240	-	-
Affymetrix Rat Gene 1.0 ST Array	10876227	-	-
Affymetrix Rat Gene 1.1 ST Array	10876224	-	-
Rat Genome 230 2.0 Array	1367455_at	-	-
Rat Genome 230 2.0 Array	1367455_PM_at	-	-
Affymetrix HT Rat Focus Array	1367455_PM_at	-	-
Affymetrix HT Rat Focus Array	1367455_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500019217.rn.1	TC0500002599.rn.1	RTA TC
Rat Expression Set 230	1367455_PM_at	-	-
Rat Expression Set 230	1367455_at	-	-
Rat Expression Set 230	1367455_PM_at	-	-
Rat Expression Set 230	1367455_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10876224	-	-
Rat Genome U34 Set	rc_AI044341_s_at	-	-
Rat Genome U34 Set	U11760_at	-	-
Rat Genome U34 Set	rc_AI059675_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21583527	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363637	-	-
RatRef-12 Expression BeadChip	ILMN_62115	-	-