Rn01442395_m1 Best Coverage

• Gene Symbol: Smarcd3
• Gene Name: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 3
• Gene Aliases: -
• Chromosome Location: Chr.4: 7076711 - 7108334 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Smarcd3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001011966.1	NP_001011966.1	9 - 10	1038		109
	XM_006235883.2	XP_006235945.1	8 - 9	1135		109
	XM_006235884.2	XP_006235946.1	8 - 9	1135		109
	XM_006235885.2	XP_006235947.1	8 - 9	1099		109
	XM_006235886.2	XP_006235948.1	9 - 10	1122		109
	XM_006235887.2	XP_006235949.1	9 - 10	1086		109
	XM_006235888.2	XP_006235950.1	8 - 9	1135		109
	XM_006235889.2	XP_006235951.1	8 - 9	1099		109
GenBank mRNA	BC085349.1	-	9 - 10	1038	7107899	109

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400000097.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smarcd3

Panther Classification:

Molecular Function -

chromatin/chromatin-binding, or -regulatory protein

Gene Ontology Categories:

Process(es)

positive regulation of neuroblast proliferation
heart morphogenesis
secondary heart field specification
cardiac right ventricle formation
neural retina development
nucleosome disassembly
chromatin remodeling
transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
positive regulation of G2/M transition of mitotic cell cycle
muscle cell differentiation
regulation of protein binding
positive regulation of transcription, DNA-templated
positive regulation of smooth muscle cell differentiation

Function(s)

chromatin binding
receptor binding
transcription factor binding
ligand-dependent nuclear receptor binding
ligand-dependent nuclear receptor transcription coactivator activity
nuclear hormone receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P107851	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	174299	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	151537	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	349365	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	583389	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	9018	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	969322	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	338978	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	329904	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	645662	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	372430	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	309364	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	559713	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	849644	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	940335	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	960554	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	822935	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	386645	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	104697	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	825531	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	183859	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	887097	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	520283	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	197216	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	626718	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	80040	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	42503	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	111428	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P107851	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P107851	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P107851	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1034937	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	32448	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	58971	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10852845	-	-
Affymetrix Rat Gene 1.0 ST Array	10852851	-	-
Affymetrix Rat Gene 1.0 ST Array	10852840	-	-
Affymetrix Rat Gene 1.0 ST Array	10852849	-	-
Affymetrix Rat Gene 1.0 ST Array	10852842	-	-
Affymetrix Rat Gene 1.0 ST Array	10852847	-	-
Affymetrix Rat Gene 1.0 ST Array	10852846	-	-
Affymetrix Rat Gene 1.0 ST Array	10852841	-	-
Affymetrix Rat Gene 1.0 ST Array	10852844	-	-
Affymetrix Rat Gene 1.0 ST Array	10852839	-	-
Affymetrix Rat Gene 1.0 ST Array	10852850	-	-
Affymetrix Rat Gene 1.0 ST Array	10852848	-	-
Affymetrix Rat Gene 1.0 ST Array	10852843	-	-
Affymetrix Rat Gene 1.0 ST Array	10852837	-	-
Affymetrix Rat Gene 1.1 ST Array	10852836	-	-
Rat Genome 230 2.0 Array	1371665_PM_at	-	-
Rat Genome 230 2.0 Array	1371665_at	-	-
Rat Genome 230 2.0 Array	1377473_PM_at	-	-
Rat Genome 230 2.0 Array	1377473_at	-	-
Affymetrix HT Rat Focus Array	1371665_at	-	-
Affymetrix HT Rat Focus Array	1371665_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0400000632.rn.1	TC0400000097.rn.1	RTA TC
Rat Expression Set 230	1371665_at	-	-
Rat Expression Set 230	1371665_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10852836	-	-
Rat Genome U34 Set	rc_AI145891_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22108890	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376683	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1375383	-	-