Rn01450028_m1 Best Coverage

• Gene Symbol: Cxcl13
• Gene Name: chemokine (C-X-C motif) ligand 13
• Gene Aliases: -
• Chromosome Location: Chr.14: 15253146 - 15258223 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cxcl13
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001017496.1	NP_001017496.1	1 - 2	85		90
	XM_006250710.2	XP_006250772.1	1 - 2	123		90
GenBank mRNA	BC088260.1	-	1 - 2	85		90

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1400001453.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cxcl13

Gene Ontology Categories:

Process(es)

lymphocyte chemotaxis across high endothelial venule
positive regulation of leukocyte chemotaxis
inflammatory response
immune response
cell surface receptor signaling pathway
G protein-coupled receptor signaling pathway
positive regulation of cytosolic calcium ion concentration
cell-cell signaling
positive regulation of T cell chemotaxis
response to lipopolysaccharide
positive regulation of integrin activation
positive regulation of cell-cell adhesion mediated by integrin
B cell chemotaxis
endothelial cell chemotaxis to fibroblast growth factor
B cell chemotaxis across high endothelial venule
regulation of cell population proliferation
defense response to bacterium
lymph node development
chemokine-mediated signaling pathway
negative regulation of endothelial cell chemotaxis to fibroblast growth factor

Function(s)

chemokine activity
heparin binding
fibroblast growth factor binding
CXCR5 chemokine receptor binding
CCR10 chemokine receptor binding
CXCR chemokine receptor binding
protein heterodimerization activity
receptor ligand activity
CXCR3 chemokine receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P013437	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	106989	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	85826	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	960550	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	129356	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	16667	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013437	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013437	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P013437	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P653053	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	50445	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10775732	-	-
Affymetrix Rat Gene 1.0 ST Array	10775736	-	-
Affymetrix Rat Gene 1.0 ST Array	10775735	-	-
Affymetrix Rat Gene 1.0 ST Array	10775733	-	-
Affymetrix Rat Gene 1.0 ST Array	10775734	-	-
Affymetrix Rat Gene 1.1 ST Array	10775731	-	-
Rat Genome 230 2.0 Array	1398390_at	-	-
Rat Genome 230 2.0 Array	1398390_PM_at	-	-
Affymetrix HT Rat Focus Array	1398390_at	-	-
Affymetrix HT Rat Focus Array	1398390_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1400010715.rn.1	TC1400001453.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400010720.rn.1	TC1400001453.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400010722.rn.1	TC1400001453.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400010716.rn.1	TC1400001453.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400010719.rn.1	TC1400001453.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400010721.rn.1	TC1400001453.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400010717.rn.1	TC1400001453.rn.1	RTA TC
Rat Expression Set 230	1398390_PM_at	-	-
Rat Expression Set 230	1398390_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10775731	-	-
Rat Genome U34 Set	rc_AA892854_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22113245	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1356758	-	-