Rn01450612_s1 Best Coverage

• Gene Symbol: Sox4
• Gene Name: SRY (sex determining region Y)-box 4
• Gene Aliases: -
• Chromosome Location: Chr.17: 37615022 - 37619728 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271205.1	NP_001258134.1	1	1877		63

More Information

Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

• Set Membership: Amplicon length less than or equal to 70, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

HMG box transcription factor

Gene Ontology Categories:

Process(es)

skeletal system development
response to hypoxia
neural tube formation
pro-B cell differentiation
mitral valve morphogenesis
cardiac ventricle formation
cardiac right ventricle morphogenesis
atrial septum primum morphogenesis
noradrenergic neuron differentiation
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
heart development
positive regulation of cell proliferation
negative regulation of cell proliferation
glial cell proliferation
spinal cord development
spinal cord motor neuron differentiation
glial cell development
positive regulation of Wnt signaling pathway
T cell differentiation
endocrine pancreas development
negative regulation of protein ubiquitination
regulation of protein stability
positive regulation of insulin secretion
somatic stem cell population maintenance
ascending aorta morphogenesis
glucose homeostasis
DNA damage response, detection of DNA damage
positive regulation of apoptotic process
positive regulation of translation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of protein export from nucleus
sympathetic nervous system development
protein stabilization
canonical Wnt signaling pathway
limb bud formation
ventricular septum morphogenesis
negative regulation of cell death
neuroepithelial cell differentiation
kidney morphogenesis
cellular response to glucose stimulus
positive regulation of canonical Wnt signaling pathway
positive regulation of N-terminal peptidyl-lysine acetylation

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription coactivator activity
transcription factor activity, sequence-specific DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P050650	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P050650	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P050650	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P050650	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1071095	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P382226	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P16820	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10794968	-	-
Affymetrix Rat Gene 1.1 ST Array	10794967	-	-
Rat Genome 230 2.0 Array	1383137_PM_at	-	-
Rat Genome 230 2.0 Array	1375123_PM_at	-	-
Rat Genome 230 2.0 Array	1383989_PM_at	-	-
Rat Genome 230 2.0 Array	1375257_at	-	-
Rat Genome 230 2.0 Array	1375123_at	-	-
Rat Genome 230 2.0 Array	1393571_PM_at	-	-
Rat Genome 230 2.0 Array	1383137_at	-	-
Rat Genome 230 2.0 Array	1373860_PM_at	-	-
Rat Genome 230 2.0 Array	1393571_at	-	-
Rat Genome 230 2.0 Array	1384000_PM_at	-	-
Rat Genome 230 2.0 Array	1375257_PM_at	-	-
Rat Genome 230 2.0 Array	1383989_at	-	-
Rat Genome 230 2.0 Array	1384000_at	-	-
Rat Genome 230 2.0 Array	1373860_at	-	-
Affymetrix HT Rat Focus Array	1384000_at	-	-
Affymetrix HT Rat Focus Array	1383989_PM_at	-	-
Affymetrix HT Rat Focus Array	1373860_PM_at	-	-
Affymetrix HT Rat Focus Array	1373860_at	-	-
Affymetrix HT Rat Focus Array	1375123_PM_at	-	-
Affymetrix HT Rat Focus Array	1375257_PM_at	-	-
Affymetrix HT Rat Focus Array	1375257_at	-	-
Affymetrix HT Rat Focus Array	1384000_PM_at	-	-
Affymetrix HT Rat Focus Array	1383989_at	-	-
Affymetrix HT Rat Focus Array	1375123_at	-	-
Rat Expression Set 230	1375257_PM_at	-	-
Rat Expression Set 230	1375123_at	-	-
Rat Expression Set 230	1375257_at	-	-
Rat Expression Set 230	1375123_PM_at	-	-
Rat Expression Set 230	1373860_at	-	-
Rat Expression Set 230	1373860_PM_at	-	-
Rat Expression Set 230	1383989_at	-	-
Rat Expression Set 230	1383137_PM_at	-	-
Rat Expression Set 230	1384000_at	-	-
Rat Expression Set 230	1383137_at	-	-
Rat Expression Set 230	1384000_PM_at	-	-
Rat Expression Set 230	1383989_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10794967	-	-
Rat Genome U34 Set	rc_AA963158_at	-	-
Rat Genome U34 Set	rc_AA956294_at	-	-
Rat Genome U34 Set	rc_AI030701_at	-	-
Rat Genome U34 Set	rc_AI013050_at	-	-
Rat Genome U34 Set	rc_AA819698_at	-	-
Rat Genome U34 Set	rc_AI229616_at	-	-
Rat Genome U34 Set	rc_AI137787_at	-	-
Rat Genome U34 Set	rc_AI137765_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21746623	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1350349	-	-
RatRef-12 Expression BeadChip	ILMN_58704	-	-