Rn01456829_m1 Best Coverage

• Gene Symbol: Ccdc47
• Gene Name: coiled-coil domain containing 47
• Gene Aliases: RGD1308813
• Chromosome Location: Chr.10: 94388425 - 94406949 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ccdc47
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001013974.1	NP_001013996.1	2 - 3	441		68
GenBank mRNA	BC085824.1	-	2 - 3	441	7127239	68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000004420.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ccdc47

Gene Ontology Categories:

Process(es)

osteoblast differentiation
ER overload response
endoplasmic reticulum organization
post-embryonic development
ER-associated ubiquitin-dependent protein catabolic process
calcium ion homeostasis

Function(s)

calcium ion binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P748891	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	420246	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	496331	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	741296	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	147561	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	570878	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	550312	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	750110	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	971284	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	421044	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	625197	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	649109	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	68359	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	384180	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	42099	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	703545	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	248162	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	200500	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	242	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	140712	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	58213	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	49640	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	45195	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	19482	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P748891	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P748891	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P748891	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P331164	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	83231	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	61749	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	44831	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10748225	-	-
Affymetrix Rat Gene 1.0 ST Array	10748230	-	-
Affymetrix Rat Gene 1.0 ST Array	10748223	-	-
Affymetrix Rat Gene 1.0 ST Array	10748229	-	-
Affymetrix Rat Gene 1.0 ST Array	10748233	-	-
Affymetrix Rat Gene 1.0 ST Array	10748224	-	-
Affymetrix Rat Gene 1.0 ST Array	10748227	-	-
Affymetrix Rat Gene 1.0 ST Array	10748222	-	-
Affymetrix Rat Gene 1.0 ST Array	10748232	-	-
Affymetrix Rat Gene 1.0 ST Array	10748228	-	-
Affymetrix Rat Gene 1.0 ST Array	10748231	-	-
Affymetrix Rat Gene 1.0 ST Array	10748226	-	-
Affymetrix Rat Gene 1.1 ST Array	10748221	-	-
Rat Genome 230 2.0 Array	1399003_at	-	-
Rat Genome 230 2.0 Array	1399003_PM_at	-	-
Affymetrix HT Rat Focus Array	1399003_at	-	-
Affymetrix HT Rat Focus Array	1399003_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000041668.rn.1	TC1000004420.rn.1	RTA TC
Rat Expression Set 230	1399003_PM_at	-	-
Rat Expression Set 230	1399003_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10748221	-	-
Rat Genome U34 Set	rc_AI171882_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22420926	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1348811	-	-