Rn01457015_g1 Best Coverage

• Gene Symbol: Rbpj
• Gene Name: recombination signal binding protein for immunoglobulin kappa J region
• Gene Aliases: -
• Chromosome Location: Chr.14: 59657741 - 59736159 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rbpj
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001106631.1	NP_001100101.1	3 - 5	215		76
	XM_008770190.1	XP_008768412.1	2 - 4	886		76
	XM_008770191.1	XP_008768413.1	2 - 4	127		76
	XM_008770192.1	XP_008768414.1	2 - 4	2305		76
	XM_008770193.1	XP_008768415.1	3 - 5	298		76

More Information

Additional Information:

This assay is in the 5'UTR region of the NM_001106631.1 transcripts.

• Set Membership: Amplicon length between 71 and 85, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
angiogenesis
somitogenesis
epithelial to mesenchymal transition
blood vessel remodeling
inflammatory response to antigenic stimulus
secondary heart field specification
outflow tract morphogenesis
endocardium development
endocardium morphogenesis
epithelial to mesenchymal transition involved in endocardial cushion formation
cardiac left ventricle morphogenesis
ventricular trabecula myocardium morphogenesis
regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
humoral immune response
Notch signaling pathway
positive regulation of transcription of Notch receptor target
heart development
positive regulation of cell proliferation
negative regulation of cell proliferation
auditory receptor cell fate commitment
epidermal cell fate specification
regulation of gene expression
positive regulation of gene expression
negative regulation of neuron projection development
negative regulation of smooth muscle cell migration
pituitary gland development
hemopoiesis
neuron differentiation
B cell differentiation
keratinocyte differentiation
negative regulation of ossification
positive regulation of BMP signaling pathway
negative regulation of smooth muscle cell apoptotic process
somatic stem cell population maintenance
dorsal aorta morphogenesis
atrioventricular canal development
defense response to bacterium
myeloid dendritic cell differentiation
cell fate commitment
negative regulation of cell differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of timing of cell differentiation
positive regulation of smooth muscle cell proliferation
sebaceous gland development
hair follicle maturation
positive regulation of cardiac muscle cell proliferation
Clara cell differentiation
labyrinthine layer blood vessel development
arterial endothelial cell fate commitment
blood vessel lumenization
interleukin-4 secretion
blood vessel endothelial cell fate specification
positive regulation of ERBB signaling pathway
positive regulation of ephrin receptor signaling pathway
positive regulation of canonical Wnt signaling pathway involved in cardiac muscle cell fate commitment
positive regulation of cell proliferation involved in heart morphogenesis

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II repressing transcription factor binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
chromatin binding
transcription factor binding
protein complex binding
sequence-specific DNA binding
protein N-terminus binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1400013542.rn.1	TC1400001876.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400013541.rn.1	TC1400001876.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400013536.rn.1	TC1400001876.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400013543.rn.1	TC1400001876.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400013537.rn.1	TC1400001876.rn.1	RTA TC