Rn01457727_g1

• Gene Symbol: Bckdha
• Gene Name: branched chain ketoacid dehydrogenase E1, alpha polypeptide
• Gene Aliases: BCKDA, E1a
• Chromosome Location: Chr.1: 82423291 - 82452057 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Bckdha
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012782.1	NP_036914.1	8 - 9	1172		77
GenBank mRNA	BC089915.1	-	6 - 7	819		77
	BC161819.1	-	8 - 9	1177	9099948	77
	J02827.1	-	8 - 9	1156		77

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100005001.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Bckdha

Panther Classification:

Molecular Function -

dehydrogenase

Gene Ontology Categories:

Process(es)

response to nutrient
branched-chain amino acid catabolic process
response to glucocorticoid
response to cAMP
oxidation-reduction process

Function(s)

alpha-ketoacid dehydrogenase activity
3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity
oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
protein complex binding
metal ion binding
2-oxoisovalerate dehydrogenase (acylating) activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P15665	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	456180	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	634502	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	639025	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	628281	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	691276	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	591506	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	403957	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	349247	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	776300	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	415469	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	832236	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	121102	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	583775	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	519228	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	258535	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	788842	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	459515	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	168531	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	869814	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	44932	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	171265	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	59864	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15665	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15665	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P15665	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15665	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700251752	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	68172	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	94975	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	64151	-	-
Agilent Rat cDNA Microarray (G4105A)	700251752	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10719871	-	-
Affymetrix Rat Gene 1.0 ST Array	10719870	-	-
Affymetrix Rat Gene 1.0 ST Array	10719865	-	-
Affymetrix Rat Gene 1.0 ST Array	10719867	-	-
Affymetrix Rat Gene 1.0 ST Array	10719869	-	-
Affymetrix Rat Gene 1.0 ST Array	10719868	-	-
Affymetrix Rat Gene 1.0 ST Array	10719866	-	-
Affymetrix Rat Gene 1.0 ST Array	10719864	-	-
Affymetrix Rat Gene 1.0 ST Array	10719872	-	-
Affymetrix Rat Gene 1.1 ST Array	10719863	-	-
Rat Genome 230 2.0 Array	1380557_PM_at	-	-
Rat Genome 230 2.0 Array	1370897_at	-	-
Rat Genome 230 2.0 Array	1382828_at	-	-
Rat Genome 230 2.0 Array	1380557_at	-	-
Rat Genome 230 2.0 Array	1370897_PM_at	-	-
Rat Genome 230 2.0 Array	1382828_PM_at	-	-
Affymetrix HT Rat Focus Array	1380557_PM_at	-	-
Affymetrix HT Rat Focus Array	1370897_PM_at	-	-
Affymetrix HT Rat Focus Array	1370897_at	-	-
Affymetrix HT Rat Focus Array	1380557_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100039700.rn.1	TC0100005001.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100039701.rn.1	TC0100005001.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100039702.rn.1	TC0100005001.rn.1	RTA TC
Rat Expression Set 230	1370897_at	-	-
Rat Expression Set 230	1370897_PM_at	-	-
Rat Expression Set 230	1382828_PM_at	-	-
Rat Expression Set 230	1380557_PM_at	-	-
Rat Expression Set 230	1382828_at	-	-
Rat Expression Set 230	1380557_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10719863	-	-
Rat Genome U34 Set	J02827_g_at	-	-
Rat Genome U34 Set	J02827_at	-	-
Rat Genome U34 Set	rc_AA851950_at	-	-
Rat Genome U34 Set	rc_AI145529_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21558354	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371691	-	-