Rn01457754_g1 Best Coverage

• Gene Symbol: LOC688869
• Gene Name: similar to cytochrome c oxidase, subunit VIb polypeptide 1
• Gene Aliases: Cox6b1
• Chromosome Location: Chr.1: 89075987 - 89084834 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: LOC688869
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001145273.1	NP_001138745.1	1 - 2	119		74
	XM_006228795.1	XP_006228857.1	2 - 3	227		74
GenBank mRNA	FQ217670.1	-	2 - 3	141		74
	FQ217813.1	-	2 - 3	137		74
	FQ218018.1	-	2 - 3	189		74
	FQ221178.1	-	2 - 3	185		74
	FQ222745.1	-	2 - 3	169		74
	FQ222968.1	-	2 - 3	187		74
	FQ223479.1	-	2 - 3	179		74
	FQ223722.1	-	2 - 3	147		74
	FQ223947.1	-	2 - 3	147		74
	FQ224063.1	-	2 - 3	192		74
	FQ224135.1	-	2 - 3	147		74
	FQ226525.1	-	2 - 3	180		74

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100005160.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Gene Ontology Categories:

Process(es)

substantia nigra development
proton transmembrane transport

Function(s)

cytochrome-c oxidase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P157889	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P007073	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P078982	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	741965	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	91935	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	524358	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	308678	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P007073	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P078982	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157889	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157889	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P007073	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P078982	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P157889	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P007073	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P078982	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10720722	-	-
Affymetrix Rat Gene 1.0 ST Array	10720725	-	-
Affymetrix Rat Gene 1.0 ST Array	10818377	-	-
Affymetrix Rat Gene 1.0 ST Array	10720724	-	-
Affymetrix Rat Gene 1.0 ST Array	10720723	-	-
Affymetrix Rat Gene 1.1 ST Array	10720721	-	-
Affymetrix Rat Gene 1.1 ST Array	10818376	-	-
Affymetrix HT Rat Focus Array	1371321_at	-	-
Affymetrix HT Rat Focus Array	1371321_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100041505.rn.1	TC0100005160.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100041506.rn.1	TC0100005160.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100041502.rn.1	TC0100005160.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100041503.rn.1	TC0100005160.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100041500.rn.1	TC0100005160.rn.1	RTA TC
Rat Genome U34 Set	rc_AI104035_s_at	-	-
Rat Genome U34 Set	rc_AA946040_at	-	-
Rat Genome U34 Set	rc_AA946040_at	-	-
Rat Genome U34 Set	rc_AI104035_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21421820	-	-
ABI Rat Genome Survey Microarray	22132724	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1362270	-	-