Rn01459915_m1 Best Coverage

• Gene Symbol: Spop
• Gene Name: speckle-type POZ protein
• Gene Aliases: -
• Chromosome Location: Chr.10: 83231197 - 83311987 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Spop
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001100496.1	NP_001093966.1	3 - 4	361		96
	XM_006247180.2	XP_006247242.1	4 - 5	1165		96
	XM_006247181.2	XP_006247243.1	5 - 6	472		96
	XM_006247182.2	XP_006247244.1	4 - 5	421		96
	XM_008767968.1	XP_008766190.1	4 - 5	517		96
	XM_008767969.1	XP_008766191.1	5 - 6	439		96
GenBank mRNA	BC091435.1	-	1 - 2	87		96
	BC166743.1	-	3 - 4	361	7938440	96
	FQ217100.1	-	5 - 6	669		96

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000001471.rn.1

• Set Membership: Amplicon length between 86 and 100, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

ubiquitin-protein ligase, protein modifying enzyme

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
glucose homeostasis
protein ubiquitination involved in ubiquitin-dependent protein catabolic process
proteasome-mediated ubiquitin-dependent protein catabolic process
negative regulation of sequence-specific DNA binding transcription factor activity
positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
positive regulation of type B pancreatic cell apoptotic process

Function(s)

RNA polymerase II transcription factor binding
ubiquitin protein ligase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR1000013181.rn.1	TC1000001471.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000013183.rn.1	TC1000001471.rn.1	RTA TC

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21079308	-	-