Rn01460055_m1 Best Coverage

• Gene Symbol: Rffl
• Gene Name: ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
• Gene Aliases: -
• Chromosome Location: Chr.10: 70157621 - 70220614 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Rffl
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001004068.1	NP_001004068.1	5 - 6	1135		136
	XM_006246969.2	XP_006247031.1	6 - 7	1293		136
	XM_006246970.2	XP_006247032.1	6 - 7	1290		136
	XM_006246973.2	XP_006247035.1	6 - 7	1530		136
	XM_006246974.2	XP_006247036.1	6 - 7	1120		136
	XM_006246975.2	XP_006247037.2	7 - 8	2101		136
	XM_006246977.2	XP_006247039.1	6 - 7	2009		136
	XM_006246978.2	XP_006247040.1	6 - 7	1527		136
	XM_006246979.2	XP_006247041.1	6 - 7	1116		136
	XM_008767954.1	XP_008766176.1	7 - 8	2098		136
	XM_008767955.1	XP_008766177.1	7 - 8	2283		136
	XM_008767956.1	XP_008766178.1	6 - 7	2018		136
GenBank mRNA	AY157969.1	-	5 - 6	912		136
	BC079216.1	-	5 - 6	1135	7131890	136
	FQ210900.1	-	6 - 7	1001		136

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000003413.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Rffl

Panther Classification:

Molecular Function -

ubiquitin-protein ligase

Gene Ontology Categories:

Process(es)

ubiquitin-dependent protein catabolic process
intracellular protein transport
biological_process
regulation of fibroblast migration
negative regulation of tumor necrosis factor-mediated signaling pathway
protein ubiquitination involved in ubiquitin-dependent protein catabolic process
proteasome-mediated ubiquitin-dependent protein catabolic process
protein K48-linked ubiquitination
negative regulation of signal transduction by p53 class mediator
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
negative regulation of cysteine-type endopeptidase activity involved in execution phase of apoptosis

Function(s)

protease binding
p53 binding
molecular_function
zinc ion binding
ligase activity
protein kinase binding
ubiquitin protein ligase binding
ubiquitin protein ligase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P008904	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P089565	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	587378	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	746084	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	151030	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	32318	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	803352	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	428386	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	126905	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	457620	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	840555	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	602858	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	471344	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	120488	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	468955	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	59486	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	27354	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	78004	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P008904	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P089565	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P089565	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P008904	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P008904	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P089565	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P478711	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	92230	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	46525	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10745566	-	-
Affymetrix Rat Gene 1.0 ST Array	10745559	-	-
Affymetrix Rat Gene 1.0 ST Array	10745562	-	-
Affymetrix Rat Gene 1.0 ST Array	10745560	-	-
Affymetrix Rat Gene 1.0 ST Array	10745565	-	-
Affymetrix Rat Gene 1.0 ST Array	10745564	-	-
Affymetrix Rat Gene 1.1 ST Array	10745558	-	-
Rat Genome 230 2.0 Array	1385504_at	-	-
Rat Genome 230 2.0 Array	1377590_at	-	-
Rat Genome 230 2.0 Array	1385504_PM_at	-	-
Rat Genome 230 2.0 Array	1377590_PM_at	-	-
Affymetrix HT Rat Focus Array	1377590_at	-	-
Affymetrix HT Rat Focus Array	1385504_at	-	-
Affymetrix HT Rat Focus Array	1385504_PM_at	-	-
Affymetrix HT Rat Focus Array	1377590_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000030400.rn.1	TC1000003413.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000030397.rn.1	TC1000003413.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000030401.rn.1	TC1000003413.rn.1	RTA TC
Rat Expression Set 230	1385504_PM_at	-	-
Rat Expression Set 230	1377590_at	-	-
Rat Expression Set 230	1385504_at	-	-
Rat Expression Set 230	1377590_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10745558	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21668681	-	-
ABI Rat Genome Survey Microarray	21879645	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1367792	-	-
RatRef-12 Expression BeadChip	ILMN_52853	-	-