Rn01461255_m1 Best Coverage

• Gene Symbol: Sox8
• Gene Name: SRY (sex determining region Y)-box 8
• Gene Aliases: -
• Chromosome Location: Chr.10: 14932348 - 14937336 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sox8
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001106989.1	NP_001100459.1	1 - 2	773		63

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000002429.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

osteoblast differentiation
in utero embryonic development
neural crest cell migration
transcription from RNA polymerase II promoter
signal transduction
spermatogenesis
peripheral nervous system development
biological_process
male gonad development
positive regulation of gene expression
regulation of hormone levels
positive regulation of gliogenesis
positive regulation of osteoblast proliferation
skeletal muscle cell differentiation
negative regulation of apoptotic process
cell fate commitment
fat cell differentiation
negative regulation of myoblast differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of photoreceptor cell differentiation
cell maturation
enteric nervous system development
oligodendrocyte differentiation
Sertoli cell development
astrocyte fate commitment
retina development in camera-type eye
retinal rod cell differentiation
adipose tissue development
morphogenesis of a branching epithelium
renal vesicle induction
ureter morphogenesis
metanephric nephron tubule formation
positive regulation of kidney development
positive regulation of branching involved in ureteric bud morphogenesis

Function(s)

RNA polymerase II core promoter sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
molecular_function
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor binding
sequence-specific DNA binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P052076	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	529546	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	553620	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	546467	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P052076	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P052076	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P052076	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P340472	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10741460	-	-
Affymetrix Rat Gene 1.0 ST Array	10741462	-	-
Affymetrix Rat Gene 1.0 ST Array	10741461	-	-
Affymetrix Rat Gene 1.1 ST Array	10741459	-	-
Affymetrix Rat Clariom S Assay	PSR1000021871.rn.1	TC1000002429.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000021870.rn.1	TC1000002429.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000021872.rn.1	TC1000002429.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10741459	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21991561	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1357652	-	-