Rn01462853_m1

• Gene Symbol: Cxcl12
• Gene Name: chemokine (C-X-C motif) ligand 12
• Gene Aliases: Sdf1
• Chromosome Location: Chr.4: 149261044 - 149273891 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cxcl12
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001033882.1	NP_001029054.1	1 - 2	145		156
	NM_001033883.1	NP_001029055.1	1 - 2	145		156
	NM_022177.3	NP_071513.1	1 - 2	145		156
GenBank mRNA	AF209976.1	-	1 - 2	96		156
	AF217564.1	-	1 - 2	117		156
	BC078737.1	-	1 - 2	144	7128141	156
	CK475409.1	-	1 - 2	145		156
	CV081127.1	-	1 - 2	112		156

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400001646.rn.1

Additional Information:

This assay is in the 5'UTR region of the AF209976.1,AF217564.1,BC078737.1,NM_001033882.1,NM_001033883.1,NM_022177.3 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cxcl12

Gene Ontology Categories:

Process(es)

patterning of blood vessels
response to hypoxia
ameboidal-type cell migration
neuron migration
positive regulation of endothelial cell proliferation
immune response
germ cell development
brain development
motor neuron axon guidance
positive regulation of cell proliferation
adult locomotory behavior
germ cell migration
response to radiation
response to heat
response to mechanical stimulus
cell migration
telencephalon cell migration
regulation of cell migration
positive regulation of cell migration
organ regeneration
positive regulation of dopamine secretion
T cell proliferation
response to peptide hormone
positive regulation of neuron differentiation
positive regulation of cell adhesion
positive regulation of axon extension involved in axon guidance
induction of positive chemotaxis
regulation of calcium ion transport
cell chemotaxis
chemokine-mediated signaling pathway
positive regulation of monocyte chemotaxis
positive regulation of myoblast fusion
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
negative regulation of leukocyte tethering or rolling
negative regulation of leukocyte apoptotic process
positive regulation of T cell migration

Function(s)

chemokine activity
chemokine receptor binding
CXCR chemokine receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0400011706.rn.1	TC0400001646.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400011705.rn.1	TC0400001646.rn.1	RTA TC