Rn01463253_m1 Best Coverage

• Gene Symbol: Cd9
• Gene Name: CD9 molecule
• Gene Aliases: -
• Chromosome Location: Chr.4: 157977163 - 158010091 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cd9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053018.1	NP_444177.1	1 - 2	130		98
GenBank mRNA	BC161804.1	-	1 - 2	105	9101765	98
	CF111078.1	-	1 - 2	139		98
	FQ212497.1	-	1 - 2	154		98
	FQ213039.1	-	1 - 2	179		98
	FQ213302.1	-	1 - 2	148		98
	FQ215636.1	-	1 - 2	142		98
	FQ216402.1	-	1 - 2	179		98
	FQ216770.1	-	1 - 2	166		98
	FQ219799.1	-	1 - 2	153		98
	FQ220476.1	-	1 - 2	154		98
	FQ224453.1	-	1 - 2	154		98
	FQ229965.1	-	1 - 2	201		98
	FQ230141.1	-	1 - 2	216		98
	X76489.1	-	1 - 2	69		98

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400003767.rn.1

• Set Membership: Amplicon length between 86 and 100, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

cell adhesion
fusion of sperm to egg plasma membrane
brain development
negative regulation of cell proliferation
response to water deprivation
oligodendrocyte development
paranodal junction assembly

Function(s)

integrin binding
protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P462771	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	265361	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	580704	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	97357	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	565862	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	11055	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	585022	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	384588	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	571527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	463508	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	360657	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	155182	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	489566	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	928880	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	560532	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	380792	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	150367	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	134379	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	93520	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	836656	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	511014	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	688728	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	31260	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	414827	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	784923	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	949955	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	17969	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	17723	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	137934	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	90224	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P462771	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P462771	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P462771	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P462771	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	96493	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10865723	-	-
Affymetrix Rat Gene 1.0 ST Array	10865716	-	-
Affymetrix Rat Gene 1.0 ST Array	10865718	-	-
Affymetrix Rat Gene 1.0 ST Array	10865720	-	-
Affymetrix Rat Gene 1.0 ST Array	10865717	-	-
Affymetrix Rat Gene 1.0 ST Array	10865719	-	-
Affymetrix Rat Gene 1.0 ST Array	10865722	-	-
Affymetrix Rat Gene 1.0 ST Array	10865721	-	-
Affymetrix Rat Gene 1.1 ST Array	10865715	-	-
Rat Genome 230 2.0 Array	1371499_PM_at	-	-
Rat Genome 230 2.0 Array	1371499_at	-	-
Affymetrix HT Rat Focus Array	1371499_PM_at	-	-
Affymetrix HT Rat Focus Array	1371499_at	-	-
Affymetrix Rat Clariom S Assay	PSR0400026833.rn.1	TC0400003767.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400026835.rn.1	TC0400003767.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400026834.rn.1	TC0400003767.rn.1	RTA TC
Rat Expression Set 230	1371499_PM_at	-	-
Rat Expression Set 230	1371499_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10865715	-	-
Rat Genome U34 Set	X76489cds_at	-	-
Rat Genome U34 Set	X76489cds_g_at	-	-
Rat Genome U34 Set	rc_AI012389_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22072229	-	-