Rn01464727_m1 Best Coverage

• Gene Symbol: Mapk9
• Gene Name: mitogen-activated protein kinase 9
• Gene Aliases: SAPK
• Chromosome Location: Chr.10: 35333859 - 35375742 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Mapk9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001270544.1	NP_001257473.1	9 - 10	1260		72
	NM_001270545.1	NP_001257474.1	9 - 10	1260		72
	NM_017322.2	NP_059018.1	9 - 10	1260		72
	XM_006246317.1	XP_006246379.1	9 - 10	1256		72
	XM_006246318.2	XP_006246380.1	9 - 10	1208		72
GenBank mRNA	BC061870.1	-	9 - 10	1227		72
	L27111.1	-	8 - 9	1016		72
	L27112.1	-	8 - 9	1016		72

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000004343.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Mapk9

Gene Ontology Categories:

Process(es)

MAPK cascade
release of cytochrome c from mitochondria
positive regulation of protein phosphorylation
protein phosphorylation
protein targeting to mitochondrion
activation of cysteine-type endopeptidase activity involved in apoptotic process
JNK cascade
JUN phosphorylation
central nervous system development
response to xenobiotic stimulus
response to mechanical stimulus
response to toxic substance
response to organic substance
positive regulation of gene expression
positive regulation of macrophage derived foam cell differentiation
positive regulation of cell morphogenesis involved in differentiation
response to amine
neuron projection development
positive regulation of prostaglandin biosynthetic process
regulation of protein ubiquitination
positive regulation of prostaglandin secretion
positive regulation of chemokine production
cellular response to UV
regulation of circadian rhythm
positive regulation of apoptotic process
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of nitric oxide biosynthetic process
positive regulation of transcription, DNA-templated
regulation of JNK cascade
response to cadmium ion
rhythmic process
positive regulation of nitric-oxide synthase biosynthetic process
cellular response to lipopolysaccharide
cellular response to interleukin-1
cellular response to tumor necrosis factor
cellular response to growth factor stimulus
positive regulation of apoptotic signaling pathway

Function(s)

JUN kinase activity
MAP kinase activity
protein binding
ATP binding
transcription factor binding
cysteine-type endopeptidase activator activity involved in apoptotic process
mitogen-activated protein kinase kinase kinase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P011944	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	905384	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	752583	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	198182	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	28771	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	793181	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	427608	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	567789	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	482996	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	770863	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	130906	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	167821	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	310758	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	472358	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	963327	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	725297	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	800969	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	905152	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	546460	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	969550	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	369686	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	412272	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	559921	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	62465	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	66764	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	99850	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P480222	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P480222	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P480222	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P480222	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P217423	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P451014	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700510453	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	56749	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	69074	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	78549	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	50717	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	85983	-	-
Agilent Rat cDNA Microarray (G4105A)	700510453	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10733166	-	-
Affymetrix Rat Gene 1.0 ST Array	10733175	-	-
Affymetrix Rat Gene 1.0 ST Array	10733173	-	-
Affymetrix Rat Gene 1.0 ST Array	10733165	-	-
Affymetrix Rat Gene 1.0 ST Array	10733161	-	-
Affymetrix Rat Gene 1.0 ST Array	10733170	-	-
Affymetrix Rat Gene 1.0 ST Array	10733171	-	-
Affymetrix Rat Gene 1.0 ST Array	10733168	-	-
Affymetrix Rat Gene 1.0 ST Array	10733176	-	-
Affymetrix Rat Gene 1.0 ST Array	10733162	-	-
Affymetrix Rat Gene 1.0 ST Array	10733163	-	-
Affymetrix Rat Gene 1.0 ST Array	10733177	-	-
Affymetrix Rat Gene 1.0 ST Array	10733167	-	-
Affymetrix Rat Gene 1.0 ST Array	10733172	-	-
Affymetrix Rat Gene 1.0 ST Array	10733164	-	-
Affymetrix Rat Gene 1.0 ST Array	10733174	-	-
Affymetrix Rat Gene 1.1 ST Array	10733160	-	-
Rat Genome 230 2.0 Array	1380024_at	-	-
Rat Genome 230 2.0 Array	1378237_at	-	-
Rat Genome 230 2.0 Array	1368646_PM_at	-	-
Rat Genome 230 2.0 Array	1378237_PM_at	-	-
Rat Genome 230 2.0 Array	1380024_PM_at	-	-
Rat Genome 230 2.0 Array	1368646_at	-	-
Affymetrix HT Rat Focus Array	1368646_at	-	-
Affymetrix HT Rat Focus Array	1368646_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000040015.rn.1	TC1000004343.rn.1	RTA TC
Rat Expression Set 230	1368646_at	-	-
Rat Expression Set 230	1368646_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10733160	-	-
Rat Genome U34 Set	L27112_s_at	-	-
Rat Genome U34 Set	rc_AI231354_at	-	-
Rat Genome U34 Set	rc_AI231354_g_at	-	-
Rat Genome U34 Set	rc_AI231354_g_at	-	-
Rat Genome U34 Set	rc_AI231354_at	-	-
Rat Genome U34 Set	L27112_s_at	-	-
Rat Genome U34 Set	L27112_s_at	-	-
Rat Genome U34 Set	rc_AI231354_g_at	-	-
Rat Genome U34 Set	rc_AI231354_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1357949	-	-
RatRef-12 Expression BeadChip	ILMN_65467	-	-