Rn01464736_g1 Best Coverage

• Gene Symbol: Ccl3
• Gene Name: chemokine (C-C motif) ligand 3
• Gene Aliases: MIP-1a, Scya3
• Chromosome Location: Chr.10: 70869516 - 70871066 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ccl3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_013025.2	NP_037157.2	2 - 3	253		63
GenBank mRNA	EF121994.1	-	2 - 3	184		63
	EF121995.1	-	2 - 3	184		63
	U22414.1	-	2 - 3	253		63

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000003430.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ccl3

Panther Classification:

Molecular Function -

cytokine, intercellular signal molecule

Gene Ontology Categories:

Process(es)

MAPK cascade
osteoblast differentiation
cell activation
monocyte chemotaxis
protein phosphorylation
calcium ion transport
cellular calcium ion homeostasis
exocytosis
chemotaxis
inflammatory response
cytoskeleton organization
positive regulation of cytosolic calcium ion concentration
cell-cell signaling
regulation of cell shape
response to toxic substance
positive regulation of gene expression
negative regulation of gene expression
T cell chemotaxis
release of sequestered calcium ion into cytosol by sarcoplasmic reticulum
calcium-mediated signaling
signaling
positive regulation of cell migration
negative regulation of bone mineralization
neutrophil chemotaxis
leukocyte chemotaxis
lipopolysaccharide-mediated signaling pathway
positive regulation of tumor necrosis factor production
response to drug
positive regulation of catalytic activity
eosinophil degranulation
protein kinase B signaling
positive regulation of neuron apoptotic process
astrocyte cell migration
negative regulation by host of viral transcription
negative regulation of osteoclast differentiation
positive regulation of osteoclast differentiation
positive regulation of transcription from RNA polymerase II promoter
eosinophil chemotaxis
macrophage chemotaxis
lymphocyte chemotaxis
positive regulation of interleukin-1 beta secretion
positive regulation of inflammatory response
positive regulation of calcium-mediated signaling
positive chemotaxis
positive regulation of protein kinase B signaling
positive regulation of calcium ion transport
regulation of sensory perception of pain
cell chemotaxis
positive regulation of ERK1 and ERK2 cascade
response to cholesterol
cellular response to interferon-gamma
cellular response to interleukin-1
cellular response to tumor necrosis factor
cellular response to organic cyclic compound
granulocyte chemotaxis
positive regulation of natural killer cell chemotaxis

Function(s)

protein kinase activity
calcium-dependent protein kinase C activity
chemokine activity
heparin binding
phospholipase activator activity
kinase activity
CCR1 chemokine receptor binding
CCR5 chemokine receptor binding
chemoattractant activity
identical protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P714311	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	550345	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P714311	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P714311	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P714311	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P714311	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	90508	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10745682	-	-
Affymetrix Rat Gene 1.0 ST Array	10745681	-	-
Affymetrix Rat Gene 1.0 ST Array	10745679	-	-
Affymetrix Rat Gene 1.0 ST Array	10745680	-	-
Affymetrix Rat Gene 1.0 ST Array	10745678	-	-
Affymetrix Rat Gene 1.1 ST Array	10745677	-	-
Rat Genome 230 2.0 Array	1369815_at	-	-
Rat Genome 230 2.0 Array	1369815_PM_at	-	-
Affymetrix HT Rat Focus Array	1369815_PM_at	-	-
Affymetrix HT Rat Focus Array	1369815_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000030598.rn.1	TC1000003430.rn.1	RTA TC
Rat Expression Set 230	1369815_PM_at	-	-
Rat Expression Set 230	1369815_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10745677	-	-
Rat Genome U34 Set	U22414_at	-	-
Rat Genome U34 Set	U22414_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22331826	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1369286	-	-
RatRef-12 Expression BeadChip	ILMN_54066	-	-