Rn01466010_m1 Best Coverage

• Gene Symbol: Nkx3-1
• Gene Name: NK3 homeobox 1
• Gene Aliases: -
• Chromosome Location: Chr.15: 51065316 - 51067908 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nkx3-1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001034144.1	NP_001029316.1	1 - 2	300		96
GenBank mRNA	BC100628.1	-	1 - 2	300	7938032	96

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1500000751.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Nkx3-1

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

metanephros development
somitogenesis
positive regulation of protein phosphorylation
transcription from RNA polymerase II promoter
activation of cysteine-type endopeptidase activity involved in apoptotic process
salivary gland development
heart development
positive regulation of cell proliferation
negative regulation of cell proliferation
male gonad development
positive regulation of gene expression
negative regulation of gene expression
positive regulation of cell death
positive regulation of phosphatidylinositol 3-kinase signaling
androgen receptor signaling pathway
response to testosterone
cellular response to drug
dorsal aorta development
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
steroid hormone mediated signaling pathway
protein kinase B signaling
negative regulation of insulin-like growth factor receptor signaling pathway
positive regulation of protein kinase activity
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
negative regulation of mitotic cell cycle
positive regulation of mitotic cell cycle
positive regulation of transcription from RNA polymerase II promoter
branching morphogenesis of an epithelial tube
negative regulation of epithelial cell proliferation
positive regulation of cell division
pharyngeal system development
branching involved in prostate gland morphogenesis
epithelial cell proliferation involved in salivary gland morphogenesis
negative regulation of epithelial cell proliferation involved in prostate gland development
cellular response to interleukin-1
cellular response to tumor necrosis factor
cellular response to steroid hormone stimulus
cellular response to hypoxia
mitotic cell cycle arrest
negative regulation of estrogen receptor binding
positive regulation of androgen secretion
positive regulation of response to DNA damage stimulus
positive regulation of apoptotic signaling pathway
positive regulation of intrinsic apoptotic signaling pathway

Function(s)

transcription regulatory region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter sequence-specific
core promoter binding
DNA binding
transcription factor activity, sequence-specific DNA binding
androgen receptor activity
transcription factor binding
cysteine-type endopeptidase activator activity involved in apoptotic process
estrogen receptor activity
protein kinase activator activity
estrogen receptor binding
histone deacetylase binding
sequence-specific DNA binding
protein self-association
transcription regulatory region DNA binding
MADS box domain binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P391517	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	691522	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P391517	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P391517	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P391517	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P391517	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	78569	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10781286	-	-
Affymetrix Rat Gene 1.0 ST Array	10781287	-	-
Affymetrix Rat Gene 1.1 ST Array	10781285	-	-
Rat Genome 230 2.0 Array	1395462_PM_at	-	-
Rat Genome 230 2.0 Array	1395462_at	-	-
Affymetrix HT Rat Focus Array	1395462_PM_at	-	-
Affymetrix HT Rat Focus Array	1395462_at	-	-
Affymetrix Rat Clariom S Assay	PSR1500005182.rn.1	TC1500000751.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1500005183.rn.1	TC1500000751.rn.1	RTA TC
Rat Expression Set 230	1395462_at	-	-
Rat Expression Set 230	1395462_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10781285	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1353566	-	-