Rn01467558_g1

• Gene Symbol: Tp53
• Gene Name: tumor protein p53
• Gene Aliases: Trp53, p53
• Chromosome Location: Chr.10: 56187013 - 56198449 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tp53
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_030989.3	NP_112251.2	9 - 10	1230		68
	XM_006246594.2	XP_006246656.1	10 - 11	1659		68
	XM_006246595.2	XP_006246657.1	9 - 10	2016		68
GenBank mRNA	AF209191.1	-	6 - 7	911		68
	AY009504.1	-	4 - 5	436		68
	BC081788.1	-	9 - 10	1159		68
	BC098663.1	-	9 - 10	1188		68
	FQ232659.1	-	9 - 10	1218		68
	U90328.1	-	8 - 9	1099		68
	X13058.1	-	8 - 9	1122		68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000000922.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Tp53

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
in utero embryonic development
somitogenesis
release of cytochrome c from mitochondria
T cell proliferation involved in immune response
B cell lineage commitment
T cell lineage commitment
positive regulation of leukocyte migration
response to ischemia
nucleotide-excision repair
double-strand break repair
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
apoptotic process
cellular response to DNA damage stimulus
DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator
response to oxidative stress
ER overload response
transforming growth factor beta receptor signaling pathway
Ras protein signal transduction
multicellular organism development
gastrulation
negative regulation of neuroblast proliferation
central nervous system development
aging
cell aging
protein localization
negative regulation of DNA replication
negative regulation of cell population proliferation
determination of adult lifespan
rRNA transcription
response to xenobiotic stimulus
response to UV
response to salt stress
embryo development ending in birth or egg hatching
response to inorganic substance
response to metal ion
response to X-ray
response to UV-B
response to organonitrogen compound
response to gamma radiation
positive regulation of cardiac muscle cell apoptotic process
response to organic cyclic compound
cerebellum development
negative regulation of cell growth
DNA damage response, signal transduction by p53 class mediator
negative regulation of transforming growth factor beta receptor signaling pathway
response to caffeine
positive regulation of histone deacetylation
chromatin assembly
mitotic G1 DNA damage checkpoint signaling
positive regulation of protein oligomerization
response to retinoic acid
T cell differentiation in thymus
response to vitamin B3
response to cytokine
regulation of tissue remodeling
cellular response to heat
cellular protein localization
cellular response to UV
multicellular organism growth
positive regulation of mitochondrial membrane permeability
wound healing
regulation of cell population proliferation
cellular response to glucose starvation
intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
regulation of apoptotic process
positive regulation of apoptotic process
negative regulation of apoptotic process
entrainment of circadian clock by photoperiod
response to amino acid
mitochondrial DNA repair
regulation of neuron apoptotic process
positive regulation of neuron apoptotic process
positive regulation of cell cycle
negative regulation of proteolysis
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
negative regulation of mitotic cell cycle
positive regulation of transcription by RNA polymerase II
response to antibiotic
negative regulation of fibroblast proliferation
circadian behavior
embryonic organ development
negative regulation of smooth muscle cell proliferation
positive regulation of peptidyl-tyrosine phosphorylation
regulation of catalytic activity
protein tetramerization
chromosome organization
neuron apoptotic process
regulation of intracellular pH
regulation of cell cycle
response to hyperoxia
protein-containing complex assembly
regulation of thymocyte apoptotic process
positive regulation of thymocyte apoptotic process
necroptotic process
cellular response to organonitrogen compound
cellular response to hypoxia
cellular response to xenobiotic stimulus
cellular response to ionizing radiation
intrinsic apoptotic signaling pathway by p53 class mediator
positive regulation of release of cytochrome c from mitochondria
positive regulation of cell aging
replicative senescence
oxidative stress-induced premature senescence
oligodendrocyte apoptotic process
negative regulation of mitophagy
regulation of mitochondrial membrane permeability involved in apoptotic process
regulation of intrinsic apoptotic signaling pathway by p53 class mediator
regulation of hydrogen peroxide-induced cell death
regulation of fibroblast apoptotic process
negative regulation of DNA biosynthetic process
negative regulation of reactive oxygen species metabolic process
positive regulation of reactive oxygen species metabolic process
regulation of cellular senescence
positive regulation of intrinsic apoptotic signaling pathway

Function(s)

transcription cis-regulatory region binding
RNA polymerase II transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
core promoter sequence-specific DNA binding
transcription coregulator binding
DNA-binding transcription activator activity, RNA polymerase II-specific
protease binding
p53 binding
DNA binding
chromatin binding
damaged DNA binding
double-stranded DNA binding
DNA-binding transcription factor activity
copper ion binding
protein binding
ATP binding
protein C-terminus binding
transcription factor binding
enzyme binding
protein kinase binding
protein phosphatase binding
receptor tyrosine kinase binding
ubiquitin protein ligase binding
histone deacetylase regulator activity
histone acetyltransferase binding
identical protein binding
sequence-specific DNA binding
protein heterodimerization activity
protein N-terminus binding
chaperone binding
protein phosphatase 2A binding
MDM2/MDM4 family protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P113635	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P148728	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	958985	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	508057	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	111236	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	293155	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	773039	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	759953	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	608378	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	196436	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	677448	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	82738	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P148728	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P113635	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P148728	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P113635	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P148728	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P113635	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P118929	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P150594	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	100459	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	10688	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	11900	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	2921	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10734977	-	-
Affymetrix Rat Gene 1.0 ST Array	10734983	-	-
Affymetrix Rat Gene 1.0 ST Array	10734980	-	-
Affymetrix Rat Gene 1.0 ST Array	10734982	-	-
Affymetrix Rat Gene 1.0 ST Array	10734976	-	-
Affymetrix Rat Gene 1.0 ST Array	10734981	-	-
Affymetrix Rat Gene 1.0 ST Array	10734986	-	-
Affymetrix Rat Gene 1.0 ST Array	10734978	-	-
Affymetrix Rat Gene 1.0 ST Array	10734985	-	-
Affymetrix Rat Gene 1.0 ST Array	10734984	-	-
Affymetrix Rat Gene 1.0 ST Array	10734979	-	-
Affymetrix Rat Gene 1.1 ST Array	10734975	-	-
Rat Genome 230 2.0 Array	1367830_PM_a_at	-	-
Rat Genome 230 2.0 Array	1367830_a_at	-	-
Rat Genome 230 2.0 Array	1367831_PM_at	-	-
Rat Genome 230 2.0 Array	1370752_a_at	-	-
Rat Genome 230 2.0 Array	1370752_PM_a_at	-	-
Rat Genome 230 2.0 Array	1367831_at	-	-
Affymetrix HT Rat Focus Array	1367830_a_at	-	-
Affymetrix HT Rat Focus Array	1367831_at	-	-
Affymetrix HT Rat Focus Array	1370752_a_at	-	-
Affymetrix HT Rat Focus Array	1367831_PM_at	-	-
Affymetrix HT Rat Focus Array	1367830_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1370752_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000007974.rn.1	TC1000000922.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000007975.rn.1	TC1000000922.rn.1	RTA TC
Rat Expression Set 230	1370752_a_at	-	-
Rat Expression Set 230	1367830_PM_a_at	-	-
Rat Expression Set 230	1367831_PM_at	-	-
Rat Expression Set 230	1370752_PM_a_at	-	-
Rat Expression Set 230	1367831_at	-	-
Rat Expression Set 230	1367830_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10734975	-	-
Rat Genome U34 Set	X13058_at	-	-
Rat Genome U34 Set	X13058_at	-	-
Rat Genome U34 Set	X13058_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22221068	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1366265	-	-
RatRef-12 Expression BeadChip	ILMN_49573	-	-