Trim16
Genomic Map
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| Gene Symbol: Trim16 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001135033.2 | NP_001128505.1 | 4 - 5 | 1035 | 121 | |
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1000004345.rn.1Set Membership: |
Amplicon length greater than or equal to 101
3' Most
Detect Genomic DNA
Rattus norvegicus
1700
Probe spans exons
|
Gene Ontology Categories:
Function(s)
Process(es)
biological_process
response to retinoic acid
histone H3 acetylation
histone H4 acetylation
positive regulation of keratinocyte differentiation
positive regulation of transcription, DNA-templated
response to organophosphorus
positive regulation of retinoic acid receptor signaling pathway
positive regulation of interleukin-1 beta secretion
response to growth hormone
molecular_function
DNA binding
zinc ion binding
interleukin-1 binding
NACHT domain binding
biological_process
response to retinoic acid
histone H3 acetylation
histone H4 acetylation
positive regulation of keratinocyte differentiation
positive regulation of transcription, DNA-templated
response to organophosphorus
positive regulation of retinoic acid receptor signaling pathway
positive regulation of interleukin-1 beta secretion
response to growth hormone
molecular_function
DNA binding
zinc ion binding
interleukin-1 binding
NACHT domain binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P839289 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P151627 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 119722 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 58053 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 22145 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 952360 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 299748 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 943498 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 133890 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 9437 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 658274 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 54388 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 371834 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 381674 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 690572 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 57987 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 225409 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 750509 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 511639 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 802642 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 87121 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 142273 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 176098 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P151627 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P839289 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P839289 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P151627 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P839289 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P151627 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P251031 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P187814 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10734351 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10734350 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10734352 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10734354 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10734355 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10734353 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10734349 | - | - |
| Rat Genome 230 2.0 Array | 1394257_at | - | - |
| Rat Genome 230 2.0 Array | 1394257_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1385899_at | - | - |
| Rat Genome 230 2.0 Array | 1385899_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1394257_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1394257_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1000040050.rn.1 | TC1000004345.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1000040049.rn.1 | TC1000004345.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1000040052.rn.1 | TC1000004345.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR1000040051.rn.1 | TC1000004345.rn.1 | RTA TC |
| Rat Expression Set 230 | 1394257_at | - | - |
| Rat Expression Set 230 | 1385899_PM_at | - | - |
| Rat Expression Set 230 | 1385899_at | - | - |
| Rat Expression Set 230 | 1394257_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10734349 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22115198 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1369593 | - | - |
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