Rn01476554_m1 Best Coverage

• Gene Symbol: Smg9
• Gene Name: SMG9 nonsense mediated mRNA decay factor
• Gene Aliases: RGD1309888
• Chromosome Location: Chr.1: 81259447 - 81282893 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Smg9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001014243.1	NP_001014265.1	13 - 14	1559		88
	XM_006228450.2	XP_006228512.1	13 - 14	2490		88
GenBank mRNA	BC087051.1	-	13 - 14	1559		88

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100001039.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smg9

Gene Ontology Categories:

Process(es)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Function(s)

identical protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P375042	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	935155	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	907039	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	55201	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	329877	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	811498	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	932842	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	352695	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	527558	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	127632	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	308381	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	70009	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	785844	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	714596	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	659476	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	69509	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	76420	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	66130	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P375042	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P375042	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P375042	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P375042	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	80847	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	63443	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10704952	-	-
Affymetrix Rat Gene 1.0 ST Array	10704947	-	-
Affymetrix Rat Gene 1.0 ST Array	10704955	-	-
Affymetrix Rat Gene 1.0 ST Array	10704946	-	-
Affymetrix Rat Gene 1.0 ST Array	10704954	-	-
Affymetrix Rat Gene 1.0 ST Array	10704943	-	-
Affymetrix Rat Gene 1.0 ST Array	10704944	-	-
Affymetrix Rat Gene 1.0 ST Array	10704951	-	-
Affymetrix Rat Gene 1.0 ST Array	10704953	-	-
Affymetrix Rat Gene 1.0 ST Array	10704949	-	-
Affymetrix Rat Gene 1.0 ST Array	10704945	-	-
Affymetrix Rat Gene 1.0 ST Array	10704950	-	-
Affymetrix Rat Gene 1.0 ST Array	10704948	-	-
Affymetrix Rat Gene 1.0 ST Array	10704942	-	-
Affymetrix Rat Gene 1.1 ST Array	10704941	-	-
Rat Genome 230 2.0 Array	1373655_at	-	-
Rat Genome 230 2.0 Array	1373655_PM_at	-	-
Affymetrix HT Rat Focus Array	1373655_at	-	-
Affymetrix HT Rat Focus Array	1373655_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100007328.rn.1	TC0100001039.rn.1	RTA TC
Rat Expression Set 230	1373655_PM_at	-	-
Rat Expression Set 230	1373655_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10704941	-	-
Rat Genome U34 Set	rc_AA925547_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21542752	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1361479	-	-