Rn01480857_g1 Best Coverage

• Gene Symbol: Ogfod2
• Gene Name: 2-oxoglutarate and iron-dependent oxygenase domain containing 2
• Gene Aliases: RGD1310594
• Chromosome Location: Chr.12: 37907130 - 37910439 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ogfod2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001105927.1	NP_001099397.1	3 - 4	313		100
	XM_006249331.1	XP_006249393.1	3 - 4	313		100
GenBank mRNA	BC167103.1	-	2 - 3	602		100

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1200001542.rn.1

• Set Membership: Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Probe spans exons

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Process(es)

oxidation-reduction process

Function(s)

iron ion binding
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
L-ascorbic acid binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P276530	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	756091	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	283575	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	77311	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	74300	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P276530	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P276530	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P276530	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P276530	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	100771	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10761754	-	-
Affymetrix Rat Gene 1.0 ST Array	10761753	-	-
Affymetrix Rat Gene 1.0 ST Array	10761751	-	-
Affymetrix Rat Gene 1.0 ST Array	10761757	-	-
Affymetrix Rat Gene 1.0 ST Array	10761756	-	-
Affymetrix Rat Gene 1.0 ST Array	10761755	-	-
Affymetrix Rat Gene 1.0 ST Array	10761752	-	-
Affymetrix Rat Gene 1.1 ST Array	10761750	-	-
Rat Genome 230 2.0 Array	1397733_PM_at	-	-
Rat Genome 230 2.0 Array	1397733_at	-	-
Affymetrix HT Rat Focus Array	1397733_at	-	-
Affymetrix HT Rat Focus Array	1397733_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1200013015.rn.1	TC1200001542.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013017.rn.1	TC1200001542.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013010.rn.1	TC1200001542.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013013.rn.1	TC1200001542.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013018.rn.1	TC1200001542.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013008.rn.1	TC1200001542.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1200013007.rn.1	TC1200001542.rn.1	RTA TC
Rat Expression Set 230	1397733_at	-	-
Rat Expression Set 230	1397733_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10761750	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22057292	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363708	-	-