Rn01484014_m1 Best Coverage

• Gene Symbol: Elk4
• Gene Name: ELK4, ETS-domain protein (SRF accessory protein 1)
• Gene Aliases: -
• Chromosome Location: Chr.13: 48788263 - 48813267 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Elk4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107173.2	NP_001100643.1	5 - 6	1484		77
	XM_006249770.2	XP_006249832.1	4 - 5	1576		77
	XM_006249771.2	XP_006249833.1	4 - 5	1272		77
	XM_006249772.2	XP_006249834.1	4 - 5	1405		77
	XM_006249773.2	XP_006249835.1	4 - 5	1596		77
	XM_008769467.1	XP_008767689.1	5 - 6	1849		77
GenBank mRNA	BC168230.1	-	4 - 5	1500	7382659	77

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1300000251.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

winged helix/forkhead transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
cell differentiation
histone H3 deacetylation

Function(s)

RNA polymerase II transcription factor activity, sequence-specific DNA binding
chromatin binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P148608	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P148613	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	891263	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	651169	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	239252	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	307123	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	897663	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	418500	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	663854	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	648711	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	794440	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	83716	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	70372	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	267923	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	625714	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	844067	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	120500	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	105632	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	136730	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P148608	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P148613	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P148613	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P148608	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P148613	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P148608	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P458880	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	15306	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10763871	-	-
Affymetrix Rat Gene 1.0 ST Array	10763874	-	-
Affymetrix Rat Gene 1.0 ST Array	10763873	-	-
Affymetrix Rat Gene 1.0 ST Array	10763870	-	-
Affymetrix Rat Gene 1.1 ST Array	10763869	-	-
Rat Genome 230 2.0 Array	1396356_PM_at	-	-
Rat Genome 230 2.0 Array	1391613_at	-	-
Rat Genome 230 2.0 Array	1391613_PM_at	-	-
Rat Genome 230 2.0 Array	1396356_at	-	-
Rat Genome 230 2.0 Array	1372204_at	-	-
Rat Genome 230 2.0 Array	1372204_PM_at	-	-
Affymetrix HT Rat Focus Array	1372204_at	-	-
Affymetrix HT Rat Focus Array	1372204_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1300001482.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001486.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001489.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001492.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001484.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001487.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001491.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001494.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001483.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001488.rn.1	TC1300000251.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1300001493.rn.1	TC1300000251.rn.1	RTA TC
Rat Expression Set 230	1372204_at	-	-
Rat Expression Set 230	1372204_PM_at	-	-
Rat Expression Set 230	1391613_at	-	-
Rat Expression Set 230	1391613_PM_at	-	-
Rat Expression Set 230	1396356_at	-	-
Rat Expression Set 230	1396356_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10763869	-	-
Rat Genome U34 Set	rc_AI072292_at	-	-
Rat Genome U34 Set	rc_AI070436_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21137675	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1350064	-	-