Rn01488729_m1 Best Coverage

• Gene Symbol: Nfatc4
• Gene Name: nuclear factor of activated T-cells, cytoplasmic, calcineurin-dependent 4
• Gene Aliases: -
• Chromosome Location: Chr.15: 34493163 - 34502238 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nfatc4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107264.1	NP_001100734.1	9 - 10	2776		77

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1500000524.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
branching involved in blood vessel morphogenesis
regulation of transcription, DNA-templated
transcription by RNA polymerase II
heart development
intrinsic apoptotic signaling pathway in response to DNA damage
positive regulation of tumor necrosis factor production
calcineurin-NFAT signaling cascade
cellular response to UV
negative regulation of chromatin binding
positive regulation of apoptotic process
cellular respiration
positive regulation of transcription by RNA polymerase II
regulation of synaptic plasticity
negative regulation of dendrite morphogenesis
smooth muscle cell differentiation
muscle cell development
cellular response to lithium ion
negative regulation of synapse maturation
positive regulation of apoptotic signaling pathway

Function(s)

RNA polymerase II cis-regulatory region sequence-specific DNA binding
DNA-binding transcription factor activity, RNA polymerase II-specific
DNA binding
DNA-binding transcription factor activity
transcription factor binding
peroxisome proliferator activated receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P159762	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	790684	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	264302	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	821056	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	792346	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	921479	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	873059	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	85136	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P159762	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P159762	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P159762	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P541660	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10780516	-	-
Affymetrix Rat Gene 1.0 ST Array	10780517	-	-
Affymetrix Rat Gene 1.0 ST Array	10780508	-	-
Affymetrix Rat Gene 1.0 ST Array	10780512	-	-
Affymetrix Rat Gene 1.0 ST Array	10780511	-	-
Affymetrix Rat Gene 1.0 ST Array	10780514	-	-
Affymetrix Rat Gene 1.0 ST Array	10780509	-	-
Affymetrix Rat Gene 1.0 ST Array	10780513	-	-
Affymetrix Rat Gene 1.0 ST Array	10780515	-	-
Affymetrix Rat Gene 1.0 ST Array	10780510	-	-
Affymetrix Rat Gene 1.1 ST Array	10780507	-	-
Rat Genome 230 2.0 Array	1392426_PM_x_at	-	-
Rat Genome 230 2.0 Array	1390573_PM_a_at	-	-
Rat Genome 230 2.0 Array	1390573_a_at	-	-
Rat Genome 230 2.0 Array	1392426_x_at	-	-
Affymetrix HT Rat Focus Array	1392426_PM_x_at	-	-
Affymetrix HT Rat Focus Array	1392426_x_at	-	-
Affymetrix HT Rat Focus Array	1390573_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1390573_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR1500003572.rn.1	TC1500000524.rn.1	RTA TC
Rat Expression Set 230	1390573_a_at	-	-
Rat Expression Set 230	1390573_PM_a_at	-	-
Rat Expression Set 230	1392426_x_at	-	-
Rat Expression Set 230	1392426_PM_x_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10780507	-	-
Rat Genome U34 Set	rc_AI011576_at	-	-
Rat Genome U34 Set	rc_AI172578_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21711970	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1370683	-	-