Rn01490608_m1 Best Coverage

• Gene Symbol: Chi3l1
• Gene Name: chitinase 3-like 1 (cartilage glycoprotein-39)
• Gene Aliases: Chil1
• Chromosome Location: Chr.13: 51022826 - 51030797 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Chi3l1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053560.1	NP_446012.1	6 - 7	637		107
	XM_006249892.2	XP_006249954.2	6 - 7	691		107
	XM_008769574.1	XP_008767796.1	6 - 7	658		107
GenBank mRNA	AF062038.1	-	4 - 5	518		107
	BC091365.1	-	6 - 7	637	7319171	107
	EF467168.1	-	4 - 5	518		107
	FQ232458.1	-	3 - 4	303		107

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1300000303.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Chi3l1

Panther Classification:

Molecular Function -

glycosidase

Gene Ontology Categories:

Process(es)

carbohydrate metabolic process
chitin catabolic process
apoptotic process
inflammatory response
immune response
activation of NF-kappaB-inducing kinase activity
response to mechanical stimulus
positive regulation of peptidyl-threonine phosphorylation
lung development
response to tumor necrosis factor
positive regulation of angiogenesis
positive regulation of protein kinase B signaling
positive regulation of ERK1 and ERK2 cascade
response to interleukin-1
response to interleukin-6
cellular response to interleukin-1
cellular response to tumor necrosis factor
interleukin-8 secretion

Function(s)

molecular_function
chitinase activity
chitin binding
carbohydrate binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P452176	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	60334	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	941449	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	952695	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	631270	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	343882	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	694783	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	921217	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	36376	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P452176	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P452176	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P452176	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P452176	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701440290	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	56348	-	-
Agilent Rat cDNA Microarray (G4105A)	701440290	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10764071	-	-
Affymetrix Rat Gene 1.0 ST Array	10764077	-	-
Affymetrix Rat Gene 1.0 ST Array	10764070	-	-
Affymetrix Rat Gene 1.0 ST Array	10764078	-	-
Affymetrix Rat Gene 1.0 ST Array	10764073	-	-
Affymetrix Rat Gene 1.0 ST Array	10764075	-	-
Affymetrix Rat Gene 1.0 ST Array	10764076	-	-
Affymetrix Rat Gene 1.0 ST Array	10764072	-	-
Affymetrix Rat Gene 1.0 ST Array	10764074	-	-
Affymetrix Rat Gene 1.1 ST Array	10764069	-	-
Rat Genome 230 2.0 Array	1392171_PM_at	-	-
Rat Genome 230 2.0 Array	1392171_at	-	-
Affymetrix HT Rat Focus Array	1392171_at	-	-
Affymetrix HT Rat Focus Array	1392171_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1300001922.rn.1	TC1300000303.rn.1	RTA TC
Rat Expression Set 230	1392171_PM_at	-	-
Rat Expression Set 230	1392171_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10764069	-	-
Rat Genome U34 Set	rc_AA945643_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22221549	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359657	-	-