Rn01494270_m1 Best Coverage

• Gene Symbol: Ercc8
• Gene Name: excision repair cross-complementation group 8
• Gene Aliases: Ckn1
• Chromosome Location: Chr.2: 39434617 - 39473392 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ercc8
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001107650.2	NP_001101120.2	8 - 9	775		77
	NR_073139.1		8 - 9	726		77
	NR_073140.1		7 - 8	673		77
	XM_008760726.1	XP_008758948.1	8 - 9	837		77
	XM_008760727.1	XP_008758949.1	8 - 9	840		77
	XM_008760728.1	XP_008758950.1	7 - 8	685		77
GenBank mRNA	BC089220.1	-	8 - 9	690		77
	BC161924.1	-	7 - 8	650	8370925	77

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200000343.rn.1

• Set Membership: Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Probe spans exons

Panther Classification:

Molecular Function -

DNA metabolism protein, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

protein polyubiquitination
transcription-coupled nucleotide-excision repair
nucleotide-excision repair
cellular response to DNA damage stimulus
response to oxidative stress
biological_process
response to UV
response to X-ray
proteasome-mediated ubiquitin-dependent protein catabolic process
positive regulation of DNA repair
protein autoubiquitination

Function(s)

molecular_function
DNA helicase activity
ubiquitin-protein transferase activity
DNA-dependent ATPase activity
protein complex binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0200001968.rn.1	TC0200000343.rn.1	RTA TC