Rn01497203_m1 Best Coverage

• Gene Symbol: Jmjd6
• Gene Name: jumonji domain containing 6
• Gene Aliases: Ptdsr
• Chromosome Location: Chr.10: 105781752 - 105787803 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Jmjd6
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001012143.2	NP_001012143.2	5 - 6	1365		61
	XM_006247806.1	XP_006247868.1	6 - 7	1249		61
GenBank mRNA	BC079012.1	-	5 - 6	1327	7113380	61
	BM391923.1	-	1 - 2			61

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000004174.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Jmjd6

Panther Classification:

Molecular Function -

protein modifying enzyme

Gene Ontology Categories:

Process(es)

blood vessel development
kidney development
sprouting angiogenesis
transcription, DNA-templated
regulation of transcription, DNA-templated
mRNA processing
cell surface receptor signaling pathway
heart development
biological_process
RNA splicing
peptidyl-lysine hydroxylation to 5-hydroxy-L-lysine
lung development
T cell differentiation in thymus
macrophage activation
apoptotic cell clearance
recognition of apoptotic cell
regulation of mRNA splicing, via spliceosome
erythrocyte development
oxidation-reduction process
retina development in camera-type eye
histone H3-R2 demethylation
histone H4-R3 demethylation

Function(s)

molecular_function
single-stranded RNA binding
receptor activity
iron ion binding
histone demethylase activity (H3-R2 specific)
histone demethylase activity (H4-R3 specific)
identical protein binding
peptidyl-lysine 5-dioxygenase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P17681	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	323605	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	430577	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	109498	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	287058	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P17681	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P17681	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P17681	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P17681	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	70378	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10749355	-	-
Affymetrix Rat Gene 1.0 ST Array	10749353	-	-
Affymetrix Rat Gene 1.0 ST Array	10749360	-	-
Affymetrix Rat Gene 1.0 ST Array	10749356	-	-
Affymetrix Rat Gene 1.0 ST Array	10749359	-	-
Affymetrix Rat Gene 1.0 ST Array	10749358	-	-
Affymetrix Rat Gene 1.0 ST Array	10749357	-	-
Affymetrix Rat Gene 1.0 ST Array	10749354	-	-
Affymetrix Rat Gene 1.1 ST Array	10749352	-	-
Rat Genome 230 2.0 Array	1374632_PM_at	-	-
Rat Genome 230 2.0 Array	1391799_at	-	-
Rat Genome 230 2.0 Array	1391799_PM_at	-	-
Rat Genome 230 2.0 Array	1374632_at	-	-
Affymetrix HT Rat Focus Array	1374632_PM_at	-	-
Affymetrix HT Rat Focus Array	1374632_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000038134.rn.1	TC1000004174.rn.1	RTA TC
Rat Expression Set 230	1374632_at	-	-
Rat Expression Set 230	1374632_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10749352	-	-
Rat Genome U34 Set	rc_AI070778_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22120007	-	-