Rn01498488_m1

Gene Symbol:

Capns1 LOC100911363

Gene Name:

calpain, small subunit 1

calpain small subunit 1-like

Gene Aliases:

Capn4

-

Chromosome Location:

Chr.1: 90918124 - 91071025 on Build Rnor_6.0

Chromosome Location:

Chr.1: 91058368 - 91064929 on Build Rnor_6.0

Species:

Rat

Species Specific ID (Flybase ID):

-

-

Assay Details

Gene Symbol: Capns1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_017118.1	NP_058814.1	2 - 3	266		75
GenBank mRNA	BC098068.1	-	2 - 3	266		75
	U53859.1	-	1 - 2	202		75

Gene Symbol: LOC100911363
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	XM_003748836.3	XP_003748884.1	2 - 3	315		75
	XM_008759263.1	XP_008757485.1	2 - 3	517		75

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100005139.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Capns1
Click here to find siRNAs for Gene LOC100911363

Gene Ontology Categories:

Process(es)

proteolysis

Function(s)

calcium-dependent cysteine-type endopeptidase activity
calcium ion binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P440450	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	859946	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	874551	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	268992	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	393065	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P440450	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P440450	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P440450	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P440450	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	68294	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10705982	-	-
Affymetrix Rat Gene 1.0 ST Array	10705980	-	-
Affymetrix Rat Gene 1.0 ST Array	10705985	-	-
Affymetrix Rat Gene 1.0 ST Array	10705983	-	-
Affymetrix Rat Gene 1.0 ST Array	10705984	-	-
Affymetrix Rat Gene 1.0 ST Array	10705981	-	-
Affymetrix Rat Gene 1.0 ST Array	10868239	-	-
Affymetrix Rat Gene 1.0 ST Array	10705986	-	-
Affymetrix Rat Gene 1.0 ST Array	10868240	-	-
Affymetrix Rat Gene 1.0 ST Array	10705979	-	-
Affymetrix Rat Gene 1.1 ST Array	10868238	-	-
Affymetrix Rat Gene 1.1 ST Array	10705978	-	-
Rat Genome 230 2.0 Array	1367462_at	-	-
Rat Genome 230 2.0 Array	1367462_PM_at	-	-
Affymetrix HT Rat Focus Array	1367462_PM_at	-	-
Affymetrix HT Rat Focus Array	1367462_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100041150.rn.1	TC0100005139.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100041153.rn.1	TC0100005139.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100041154.rn.1	TC0100005139.rn.1	RTA TC
Rat Expression Set 230	1367462_PM_at	-	-
Rat Expression Set 230	1367462_at	-	-
Rat Expression Set 230	1367462_PM_at	-	-
Rat Expression Set 230	1367462_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10868238	-	-
Affymetrix Rat Gene 1.0 ST Array	10705978	-	-
Rat Genome U34 Set	U53859_g_at	-	-
Rat Genome U34 Set	rc_AA892814_s_at	-	-
Rat Genome U34 Set	U53859_at	-	-
Rat Genome U34 Set	rc_AI236570_s_at	-	-
Rat Genome U34 Set	rc_AI236570_s_at	-	-
Rat Genome U34 Set	U53859_g_at	-	-
Rat Genome U34 Set	rc_AA892814_s_at	-	-
Rat Genome U34 Set	U53859_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22240778	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1357622	-	-