Rn01503063_m1 Best Coverage

• Gene Symbol: Cry1
• Gene Name: cryptochrome circadian clock 1
• Gene Aliases: -
• Chromosome Location: Chr.7: 24534591 - 24634098 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cry1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_198750.2	NP_942045.2	7 - 8	1671		65
	XM_008765225.1	XP_008763447.1	7 - 8	1695		65
GenBank mRNA	AF545855.1	-	7 - 8	1235		65
	BC107677.1	-	7 - 8	1671	7939194	65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700000390.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cry1

Panther Classification:

Molecular Function -

DNA photolyase

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
gluconeogenesis
DNA repair
transcription, DNA-templated
DNA damage induced protein phosphorylation
signal transduction
circadian rhythm
protein-chromophore linkage
lipid storage
negative regulation of protein ubiquitination
response to insulin
circadian regulation of gene expression
response to glucagon
glucose homeostasis
regulation of circadian rhythm
negative regulation of circadian rhythm
entrainment of circadian clock by photoperiod
negative regulation of G-protein coupled receptor protein signaling pathway
negative regulation of transcription, DNA-templated
regulation of DNA damage checkpoint
negative regulation of glucocorticoid receptor signaling pathway
negative regulation of glucocorticoid secretion

Function(s)

nucleotide binding
transcription factor activity, transcription factor binding
core promoter sequence-specific DNA binding
core promoter binding
double-stranded DNA binding
deoxyribodipyrimidine photo-lyase activity
DNA photolyase activity
DNA (6-4) photolyase activity
transcription factor binding
photoreceptor activity
kinase binding
protein kinase binding
phosphatase binding
nuclear hormone receptor binding
histone deacetylase binding
ubiquitin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0700003334.rn.1	TC0700000390.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700003335.rn.1	TC0700000390.rn.1	RTA TC