Rn01504576_m1 Best Coverage

• Gene Symbol: Scx
• Gene Name: scleraxis
• Gene Aliases: -
• Chromosome Location: Chr.7: 117519075 - 117521093 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Scx
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001130508.1	NP_001123980.1	1 - 2	761		63

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700001357.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Panther Classification:

Molecular Function -

basic helix-loop-helix transcription factor

Gene Ontology Categories:

Process(es)

mesoderm formation
tissue homeostasis
endochondral ossification
chondrocyte differentiation
heart valve morphogenesis
heart valve formation
transcription, DNA-templated
transcription from RNA polymerase II promoter
positive regulation of cell proliferation
positive regulation of gene expression
cell differentiation
collagen fibril organization
BMP signaling pathway
positive regulation of collagen biosynthetic process
skeletal muscle cell differentiation
tendon development
tendon cell differentiation
tendon formation
deltoid tuberosity development
negative regulation of apoptotic process
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
embryonic skeletal system development
face morphogenesis
regulation of cartilage development
positive regulation of cartilage development
sclerotome development
cellular response to mechanical stimulus
cellular response to transforming growth factor beta stimulus
cellular response to BMP stimulus
positive regulation of gastrulation

Function(s)

RNA polymerase II distal enhancer sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding
DNA binding
bHLH transcription factor binding
sequence-specific DNA binding
protein heterodimerization activity
E-box binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P039737	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P142942	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P142942	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P039737	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P039737	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P142942	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P039737	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P142942	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10897287	-	-
Affymetrix Rat Gene 1.0 ST Array	10897286	-	-
Affymetrix Rat Gene 1.1 ST Array	10897285	-	-
Rat Genome 230 2.0 Array	1393338_at	-	-
Rat Genome 230 2.0 Array	1393338_PM_at	-	-
Affymetrix HT Rat Focus Array	1393338_PM_at	-	-
Affymetrix HT Rat Focus Array	1393338_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700009934.rn.1	TC0700001357.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700009935.rn.1	TC0700001357.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700009937.rn.1	TC0700001357.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700009938.rn.1	TC0700001357.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700009931.rn.1	TC0700001357.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700009932.rn.1	TC0700001357.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700009933.rn.1	TC0700001357.rn.1	RTA TC
Rat Expression Set 230	1393338_at	-	-
Rat Expression Set 230	1393338_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10897285	-	-
Rat Genome U34 Set	rc_AI172335_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21302340	-	-